NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS48138.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48138.1 Public Homo sapiens X APOOL 24 110 108 CCDS HistoryNCBI Gene:139322Re-query CCDS DB by CCDS ID:48138.1Re-query CCDS DB by GeneID:139322See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48138.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373173.7 ENSP00000362268.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373173.7Link to Ensembl Protein Viewer:ENSP00000362268.2Re-query CCDS DB by Nucleotide ID:ENST00000373173Re-query CCDS DB by Protein ID:ENSP00000362268
Original member Current member NCBI NM_198450.6 NP_940852.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198450.6Link to Protein Sequence:NP_940852.3Re-query CCDS DB by Nucleotide ID:NM_198450Re-query CCDS DB by Protein ID:NP_940852Link to BLAST:NP_940852.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940852.3 268 Q6UXV4 268 100% 0 0

Chromosomal Locations for CCDS 48138.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 85003913 85003927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85046446 85046550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85051389 85051508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85054344 85054398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85055827 85055925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85067127 85067218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85073998 85074111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85074274 85074391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 85087590 85087678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGGCGGCCATCAGGATGGGAAAACTGACAACCATGCCTGCAGGTCTGATATATGCATCTGTAAGTGTAC
AT
GCAGCCAAACAAGAGGAATCCAAAAAGCAGCTAGTGAAACCAGAGCAGCTCCCCATATATACTGCACC
A
CCGCTCCAGTCTAAATATGTTGAAGAGCAGCCTGGTCATTTACAAATGGGCTTTGCTTCCATCCGCACT
GCA
ACTGGTTGTTACATTGGCTGGTGCAAGGGTGTTTATGTCTTTGTGAAAAATGGGATAATGGATACAG
TA
CAATTTGGAAAAGATGCTTATGTCTATCTGAAGAATCCTCCTCGAGATTTTCTTCCGAAAATGGGAGT
T
ATTACAGTTTCAGGATTGGCGGGCTTGGTTTCAGCGAGAAAAGGTTCCAAGTTTAAGAAAATTACTTAT
CCT
CTGGGACTGGCCACTTTAGGAGCAACTGTTTGCTACCCAGTTCAGTCCGTAATAATTGCTAAGGTAA
CA
GCAAAAAAGGTATATGCTACAAGCCAGCAAATTTTTGGAGCAGTTAAATCATTGTGGACAAAAAGCAG
C
AAAGAAGAGTCACTCCCTAAACCTAAAGAAAAAACTAAGCTAGGATCCTCTTCCGAAATAGAAGTACCT
GCA
AAAACAACTCACGTCTTGAAACACTCAGTGCCCTTGCCAACAGAACTCAGCTCTGAAGCAAAGACCA
AA
TCAGAATCCACTTCAGGTGCAACCCAGTTTATGCCTGACCCCAAGCTCATGGATCACGGGCAGTCCCA
C
CCAGAAGATATAGATATGTACAGCACTAGAAGCTGA


Translation (268 aa):
MAAIRMGKLTTMPAGLIYASVSVHAAKQEESKKQLVKPEQLPIYTAPPLQSKYVEEQPGHLQMGFASIRT
A
TGCYIGWCK
GVYVFVKNGIMDTVQFGKDAYVYLKNPPRDFLPKMGVITVSGLAGLVSARKGSKFKKITY
P
LGLATLGATVCYPVQSVIIAK
VTAKKVYATSQQIFGAVKSLWTKSSKEESLPKPKEKTKLGSSSEIEVP
A
KTTHVLKHSVPLPTELSSEAKTKSESTS
GATQFMPDPKLMDHGQSHPEDIDMYSTRS



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser