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Report for CCDS42995.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42995.1 Public Homo sapiens 22 SRRD 24 110 108 CCDS HistoryNCBI Gene:402055Re-query CCDS DB by CCDS ID:42995.1Re-query CCDS DB by GeneID:402055See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42995.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000215917.11 ENSP00000215917.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000215917.11Link to Ensembl Protein Viewer:ENSP00000215917.6Re-query CCDS DB by Nucleotide ID:ENST00000215917Re-query CCDS DB by Protein ID:ENSP00000215917
Original member Current member NCBI NM_001013694.3 NP_001013716.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001013694.3Link to Protein Sequence:NP_001013716.2Re-query CCDS DB by Nucleotide ID:NM_001013694Re-query CCDS DB by Protein ID:NP_001013716Link to BLAST:NP_001013716.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013716.2 339 Q9UH36 339 100% 0 0

Chromosomal Locations for CCDS 42995.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 26483891 26484099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26486023 26486063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26488029 26488288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26488390 26488488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26490044 26490198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26491025 26491070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26491463 26491672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGCTGCGGCCGCAGCTGCGGCGCTGGAATCCTGGCAGGCGGCGGCTCCGCGGAAGAGGCGCTCCGCGG
CTCGACGGCCGCGGCGGAGGGAGGCGGCGCCCCGGGGGAGAGAGGCGGCGCCCCGGGGGAGAGAGGCGGC
GCCCCGGGGCCCCGAGGCGGAGTTCGAGTCTGACAGCGGAGTCGTGCTTCGTCGCATCTGGGAGGCTGAG
AAGGACCTGTTTATCTCTGATTTCTGGAGTTCAGCACTAGAAACCATCAATAGATGTCTCACAAAACATC
TGGAACAACTGAAGGCCCCTGTGGGGACTCTTTCAGACATCTTTGGAAACCTGCATCTTGACTCATTGCC
AGAGGAGTCAGATGTGGCCACTGATTCTATCCCAAGAGAGATCTTGGTCACAGGAACCTGCCATTTGAAG
TGTGTGTGTTACGGCATTGGGAACTTTGCCACCTGCATCGTAGCTAGAAACCAGCTAACGTTTTTGCTGC
TTTTGTTGGAAAAGTGCCAGATTCCCAGAAGTCACTGTTGGGTATATGACCCTCTGTTTAGCCAACTTGA
AATTGAAGTCCTTAACACCCTTGGTGTGACTGTTCTCAGTGAGAACGAGGAAGGGAAACGGAGTATTCGC
GGGGAGCCTACCATCTTTTACATGCTCCATTGTGGGACGGCCTTGTACAACAATCTTTTATGGAGTAACT
GGTCAGTAGATGCCCTTTCTAAGATGGTCATCATTGGGAACAGTTTCAAAGGACTTGAGGAGAGGTTGTT
GGCAAGGATTCTGCAGAAAAATTATCCCTACATTGCAAAGATTTTAAAAGGACTGGAGGAGCTTGAGTTT
CCTCAGACTTCACAATACATGGACATATTTAATGATACCTCTGTCCACTGGTTCCCTGTGCAAAAGCTAG
AACAGCTCTCCATAGATATTTGGGAGTTTCGGGAAGAACCAGATTATCAGGACTGTGAGGACCTTGAAAT
CATCAGGAACAAGAGAGAAGATCCTTCTGCTACTGACTGA

Translation (339 aa):
MAAAAAAALESWQAAAPRKRRSAARRPRRREAAPRGREAAPRGREAAPRGPEAEFESDSGVVLRRIWEAE
KDLFISDFWSSALETINRCLTKHLEQLKAPVGTLSDIFGNLHLDSLPEESDVATDSIPREILVTGTCHLK
CVCYGIGNFATCIVARNQLTFLLLLLEKCQIPRSHCWVYDPLFSQLEIEVLNTLGVTVLSENEEGKRSIR
GEPTIFYMLHCGTALYNNLLWSNWSVDALSKMVIIGNSFKGLEERLLARILQKNYPYIAKILKGLEELEF
PQTSQYMDIFNDTSVHWFPVQKLEQLSIDIWEFREEPDYQDCEDLEIIRNKREDPSATD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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