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Report for CCDS37879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37879.1 Public Mus musculus 18 Tmx3 23 108 98 CCDS HistoryNCBI Gene:67988Re-query CCDS DB by CCDS ID:37879.1Re-query CCDS DB by GeneID:67988See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37879.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025515.6 ENSMUSP00000025515.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025515.6Link to Ensembl Protein Viewer:ENSMUSP00000025515.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025515Re-query CCDS DB by Protein ID:ENSMUSP00000025515
Original member NCBI NM_198295.2 NP_938037.2 Updated not alive Link to Nucleotide Sequence:NM_198295.2Link to Protein Sequence:NP_938037.2Re-query CCDS DB by Nucleotide ID:NM_198295Re-query CCDS DB by Protein ID:NP_938037
Current member NCBI NM_198295.3 NP_938037.2 Accepted alive Link to Nucleotide Sequence:NM_198295.3Link to Protein Sequence:NP_938037.2Re-query CCDS DB by Nucleotide ID:NM_198295Re-query CCDS DB by Protein ID:NP_938037Link to BLAST:NP_938037.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_938037.2 456 Q8BXZ1 456 100% 0 0

Chromosomal Locations for CCDS 37879.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 90510323 90510377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90511279 90511333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90514205 90514244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90517394 90517517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90519105 90519150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90520957 90521037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90523530 90523629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90524281 90524358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90527876 90527942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90530060 90530158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90532983 90533040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90533221 90533274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90534382 90534438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90537075 90537204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90538499 90538567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 90539939 90540196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGGCGAATGCAGTGGGGCGGAGGAGCTGGGCAGCCCTCCGGCTCTGCGCTGCGGTTATTTTACTTGATC
TG
GCTGTTTGTAAAGGATTTGTAGAAGATCTAAATGAATCATTTAAAGATAATCGAAAAGATGACATTTG
G
CTTGTTGATTTCTATGCACCCTGGTGTGGCCATTGTAAAAAGTTGGAACCAATTTGGAATGAAGTTGGG
CTT
GAAATGAAAAGTATTGGTTCTCCAGTTAAAGTTGGAAAGATGGATGCTACTTCATATTCTAGCATTG
CT
TCAGAGTTTGGAGTTCGAGGTTATCCAACAATTAAGCTATTAAAGGGAGACTTGGCATATAATTACCG
A
GGACCACGGACTAAAGATGATATAATTGAGTTTGCTCACAGAGTGTCTGGGGCTCTAATTCGGCCTCTT
CCA
AGTCAACAAATGTTCGACCATGTACGGAAGAGGCACCGTGTATTTTTTGTTTATATTGGTGGAGAAT
CA
CCCTTGAAAGAGAAATACATAGATGCTGCTTCAGAGTTAATTGTATATACATACTTTTTTTCTGCCTC
A
GAAGATGTGGTTCCTGAGTACGTGACGCTGAAAGAGATGCCTGCTGTGCTTGTTTTCAAAGATGACACT
TAT
TTTGTTTATGATGAGTATGAAGATGGCGATCTGTCCTCATGGATCAGCAGAGAGAGGTTTCAGAACT
AC
CTTACTATGGATGGTTTTCTCCTGTATGAACTTGGAGACACAGGAAAGCTTGTGGCCATAGCAGTTAT
T
GATGAGAAAAACACATCACTTGAGCATACCAGATTAAAGTCAATTATTCAGGAAGTTGCTAGAGATTTC
AGA
GACCACTTCCATAGAGATTTTCAGTTTGGCCATATGGATGGAAATGACTATATAAACACTTTGTTGA
TG
GACGAATTAACAGTCCCAACAATAGTTGTACTGAATACTTCAAACCAACAGTACTTTTTGCTAGATAG
A
CATATTAAGGATGCGAGCGACATGGTCCAGTTCATTAATAGCATTTTGGATGGTACAGTACCAGCCCAA
GGA
GGTGATAGCATTTTTCAGAGATTGAAAAGAATAGTATTTGATGCCAAATCTACAATTGTGTCTATAT
TC
AAGAGCTCTCCACTTATGGGCTGCTTTCTTTTCGGGCTGCCACTGGGTGTCATCAGTATCATGTGCTA
T
GGAATCTATACAGCTGACACAGATGGAGGCTATATAGAAGAACGATATGAAGTATCTAAAAGTGAAATG
GAA
AACCAGGAACAGATAGAAGAGAGCAAAGAGCAAGAGTCCAGCAGTGGAGGGTCTCTAGCACCTACTG
TG
CAAGAGCCCAAAGATGTATTAGAAAAGAAGAAAGATTGA


Translation (456 aa):
MANAVGRRSWAALRLCAAVILLDLAVCKGFVEDLNESFKDNRKDDIWLVDFYAPWCGHCKKLEPIWNEVG
L
EMKSIGSPVKVGKMDATSYS
SIASEFGVRGYPTIKLLKGDLAYNYRGPRTKDDIIEFAHRVSGALIRPL
P
SQQMFDHVRKRHRVFFVYIGGESPLK
EKYIDAASELIVYTYFFSASEDVVPEYVTLKEMPAVLVFKDDT
Y
FVYD
EYEDGDLSSWISRERFQNYLTMDGFLLYELGDTGKLVAIAVIDEKNTSLEHTRLKSIIQEVARDF
R
DHFH
RDFQFGHMDGNDYINTLLMDELTVPTIVVLNTSNQQYFLLDRHIKDASDMVQFINSILDGTVPAQ
G
GDSIFQRLKRIVFDAKSTIV
SIFKSSPLMGCFLFGLPLGVISIMCYGIYTADTDGGYIEERYEVSKSEM
E
NQEQIEESKEQESSSGGSLAPTVQEPKDVLEKKKD




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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