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Report for CCDS37650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37650.1 Public Mus musculus 17 Tbc1d5 23 108 98 CCDS HistoryNCBI Gene:72238Re-query CCDS DB by CCDS ID:37650.1Re-query CCDS DB by GeneID:72238See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37650.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024717.9 ENSMUSP00000024717.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024717.9Link to Ensembl Protein Viewer:ENSMUSP00000024717.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000024717Re-query CCDS DB by Protein ID:ENSMUSP00000024717
Original member Current member NCBI NM_001285993.1 NP_001272922.1 Accepted alive Link to Nucleotide Sequence:NM_001285993.1Link to Protein Sequence:NP_001272922.1Re-query CCDS DB by Nucleotide ID:NM_001285993Re-query CCDS DB by Protein ID:NP_001272922Link to BLAST:NP_001272922.1
Original member Current member NCBI NM_028162.4 NP_082438.3 Accepted alive Link to Nucleotide Sequence:NM_028162.4Link to Protein Sequence:NP_082438.3Re-query CCDS DB by Nucleotide ID:NM_028162Re-query CCDS DB by Protein ID:NP_082438Link to BLAST:NP_082438.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272922.1 815 Q80XQ2 815 100% 0 0
NP_082438.3 815 Q80XQ2 815 100% 0 0

Chromosomal Locations for CCDS 37650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 50735945 50736244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50741476 50741619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50742057 50742136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50756627 50756726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50782261 50782424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50799867 50800195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50813756 50813841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50852533 50852639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50874566 50874708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50917527 50917699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50918992 50919061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50919162 50919212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50920515 50920603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50935456 50935558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50963693 50963760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50966552 50966626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50966716 50966805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50968190 50968298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 50984605 50984674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51025074 51025170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2448 nt):
ATGTATAAGTCTGTGTCTGAAACGAGACATCCTCTGCAGTCAGAAGAACAAGAAGTAGGCATTGACCCCT
TGTTCAGTTATTCAAATAAAACAAGAGGAGATCTAAGTCAAAATGGAAGAGGATCAAATTCTACCTTAGA
CACTGAAGGGACGTTCAATTCATATATGAAAGAATGGGAAGAACTATTTGTAAACAACAATTACTTGGCA
ACAGTAAGACAGAAGGGGATTAATGGGCAGCTGAGAAGCAGCAGGTTCCGCAGCATTTGCTGGAAGCTCT
TTCTTTGTGTTCTTCCTCAAGATAAAAGTCAGTGGATAAGTAAAATCAAAGAACTAAGAGCCTGGTATAG
CAGTATTAAAGAAATACACATCACTAACCCAAGGAAGGCTGCCGGCCAGCAGGATCTGATGATCAACAAC
CCCCTATCACAGGATGAAGGAAGTCTTTGGAACAAGTTCTTTCAAGATAAAGAACTACGGTCCATGATTG
AGCAAGATGTCAAAAGAACGTTTCCTGAAATGCAGTTTTTCCAACAAGAAAATGTGAGAAAAATTCTTAC
AGATGTTCTGTTCTGCTATGCAAGAGAGAACGAGCAGTTGCTTTACAAACAGGGTATGCATGAGCTACTA
GCGCCTATCATCTTTACCCTCCACTGTGACCACCAAGCTTTTCTACATGCCAGCGAGTCTGCACAGCCCA
GTGAGGAAATGAAAACTCTCCTGAACCCTGAGTATCTGGAGCATGATGCCTATGCAATGTTCTCACAGCT
TATGGAAACTGCTGAACCTTGGTTTTCTACGTTTGAGCATGATGGTCAAAAGGGAAAAGAAACTCTGATG
GCCCCCATTCCCTTTGCTCGACCACAGGATTTAGGGCCAACAGTTGCCATTGTTACAAAAGTCAACCAGA
TCCAGGACCATCTACTGAAGAAACATGATATTGAGCTCTACATGCACCTGAACAGACTAGAAATTGCACC
ACAAATATATGGGTTACGATGGGTGCGGCTGCTGTTTGGCAGAGAGTTCCCTCTGCAGGACCTGCTGGTG
GTCTGGGATGCCCTGTTTGCGGATAGCCTCAACCTGAGCTTAGTCGACTATGTCTTCACAGCCATGCTAC
TCTATATCCGAGATGCTTTGATTTCTAGTAACTATCAGACCTGTCTTGGCCTTCTGATGCATTATCCAAT
CATCGGGGACATACACTCACTGATACTGAAGGCTCTGTTCCTTAGAGACCCAAAGAGAAATCCAAGGCCG
GCGACTTACCAGTTCCACCCCAACTTAGACTACTACAAAGCACGGGGAGCCGACCTTATGAACAAAAGCC
GGACCAATGCCAGAGGTGCTCCCCTGAATATACACAAGGTCTCCAACAGCTTGATTAACTTTGGAAGAAA
GCTGATTTCCCCAGCCTCAGCTCCGGGCAGTATGGGTGGCCCTGTACCCGGAAACAACAGCAGCAGTTCC
TTCTCTGCTGCCATCCCCACCAGGACCTCCACAGAAGCCCCAAGGCATCATTTGCTGCAGCAGCAACAGC
AGCAGCAGCACCAGCAGCAGCAGCAGCAGCAACCACAGCAGCAGCAGCAGCAACACCAGCAGCAACAGCA
GCAGCAGAGACTGATGAAATCTGAAAGCATGCCGGTACAGTTGAACAAAGGGCAAAGTTCGAAAACCATC
AGTTCATCTCCAAGTATCGAGAGTTTGCCTGGGGGAAGAGAATTCACTGGCTCTCCACCTCCATCCGCTA
CTAAAAAGGATTCCTTTTTCAGCAACATCGCACGTTCCCGTTCACACAGCAAAACCATGGGCAGGAAAGA
GTCTGAAGAAGAACTAGAGGCTCAGATCTCCTTCCTACAAGGCCAGCTGAATGACCTGGATGCCATGTGC
AAGTACTGTGCAAAGGTCATGGACATGCATCTTGTAAACATTCAAGATGTGGTATTACAAGAGAATTTGG
AAAAAGAAGATCAAATTCTGGTGTCCTTGGCAGGATTAAAACAGATCAAAGACATTCTGAAAGGTTCCCT
GCGCTTCAACCAGAGCCAGCTGGAGGCTGGCGAGAATGAGCAGATTACCATCGCTGATGACCACTACTGC
TCCAGTGGCCAGGACCAGGGCAGCCAAGTTCCTAGGGCCGCCAAGCAGGCCTCTTCAGAGATGCCAGGGT
GCACCGGTGGAACGACCCCAGATGACTTCATTCTGGTTTCCAAAGAAGATGAGGGGCACCGTGCCAGGGG
GGCCTTCTCAGGCCAGGCCCAGCCTCTTCTCACCCTCAGAAGCACATCTGGGAAAAGCCGAGCCCCAGCC
TGCTCCCCACTGCTGTTCTCAGACCCACTGATGGGCCCAGCCTCAGCCTCAGCCTCCTCCAGCAACCCCA
GCTCCAGCCCCGATGATGACAGCAGCAAGGAGTCTGGCTTCACCATTGTGAGCCCCTTGGACATCTGA

Translation (815 aa):
MYKSVSETRHPLQSEEQEVGIDPLFSYSNKTRGDLSQNGRGSNSTLDTEGTFNSYMKEWEELFVNNNYLA
TVRQKGINGQLRSSRFRSICWKLFLCVLPQDKSQWISKIKELRAWYSSIKEIHITNPRKAAGQQDLMINN
PLSQDEGSLWNKFFQDKELRSMIEQDVKRTFPEMQFFQQENVRKILTDVLFCYARENEQLLYKQGMHELL
APIIFTLHCDHQAFLHASESAQPSEEMKTLLNPEYLEHDAYAMFSQLMETAEPWFSTFEHDGQKGKETLM
APIPFARPQDLGPTVAIVTKVNQIQDHLLKKHDIELYMHLNRLEIAPQIYGLRWVRLLFGREFPLQDLLV
VWDALFADSLNLSLVDYVFTAMLLYIRDALISSNYQTCLGLLMHYPIIGDIHSLILKALFLRDPKRNPRP
ATYQFHPNLDYYKARGADLMNKSRTNARGAPLNIHKVSNSLINFGRKLISPASAPGSMGGPVPGNNSSSS
FSAAIPTRTSTEAPRHHLLQQQQQQQHQQQQQQQPQQQQQQHQQQQQQQRLMKSESMPVQLNKGQSSKTI
SSSPSIESLPGGREFTGSPPPSATKKDSFFSNIARSRSHSKTMGRKESEEELEAQISFLQGQLNDLDAMC
KYCAKVMDMHLVNIQDVVLQENLEKEDQILVSLAGLKQIKDILKGSLRFNQSQLEAGENEQITIADDHYC
SSGQDQGSQVPRAAKQASSEMPGCTGGTTPDDFILVSKEDEGHRARGAFSGQAQPLLTLRSTSGKSRAPA
CSPLLFSDPLMGPASASASSSNPSSSPDDDSSKESGFTIVSPLDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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