NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37396.1 Public Mus musculus 16 Scaf4 23 108 98 CCDS HistoryNCBI Gene:224432Re-query CCDS DB by CCDS ID:37396.1Re-query CCDS DB by GeneID:224432See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37396.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039280.8 ENSMUSP00000044472.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039280.8Link to Ensembl Protein Viewer:ENSMUSP00000044472.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039280Re-query CCDS DB by Protein ID:ENSMUSP00000044472
Original member NCBI NM_178923.4 NP_849254.2 Updated not alive Link to Nucleotide Sequence:NM_178923.4Link to Protein Sequence:NP_849254.2Re-query CCDS DB by Nucleotide ID:NM_178923Re-query CCDS DB by Protein ID:NP_849254
Current member NCBI NM_178923.5 NP_849254.2 Accepted alive Link to Nucleotide Sequence:NM_178923.5Link to Protein Sequence:NP_849254.2Re-query CCDS DB by Nucleotide ID:NM_178923Re-query CCDS DB by Protein ID:NP_849254Link to BLAST:NP_849254.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849254.2 1209 Q7TSH6-3 1209 100% 0 0

Chromosomal Locations for CCDS 37396.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 90229298 90230244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90242527 90242718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90242872 90242958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90243044 90243209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90244210 90244367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90245381 90245537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90247170 90247283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90247645 90247745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90248513 90248703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90249627 90249712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90250057 90250437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90251875 90251983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90252257 90252450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90257253 90257402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90257982 90258121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90258711 90258846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90260141 90260302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90262174 90262218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90263093 90263176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90284003 90284032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3630 nt):
ATGGACGCCGTCAACGCCTTCAACCAGGAGCTCTTCTCACTTATGGATATGAAGCCTCCCATCTCTAGAG
CCAAGATGATTCTCATTACTAAAGCTGCTATCAAAGCTATTAAGCTTTATAAGCACGTTGTTCAAATAGT
AGAAAAGTTCATCAAAAAGTGTAAGCCAGAATATAAGGTTCCAGGCCTGTATGTCATCGACTCCATCGTG
AGACAGTCTCGGCACCAGTTTGGAACTGATAAAGATGTTTTTGGGCCAAGATTCTCTAAAAATATAACTG
CTACATTCCAGTATTTATATCTTTGTCCATCTGAAGATAAGAGTAAAATAGTTCGTGTGCTAAATCTTTG
GCAAAAAAATGGAGTGTTCAAAATTGAAATTATTCAGCCTCTTTTGGACATGGCAGCAGGAACCAGTAAT
GCTGCTCCAGTAGCAGAAAATGTCACCAACAATGAAGGCTCACCTCCACCCCCAGTAAAAATCTCTTCTG
AACTTGCACAAGCTCCCACAAATTCCATGCCTACTGTAGCCCAGCTGCCCAGCTCCGATGCCTTTGCTGC
TGTGGCTCAGCTGTTCCAGACAACTCAAGGCCAGCAGCTTCAGCAGATCCTTCAGACTTTTCAACAGCCT
CCACAACCACAGTCTCCCGCCCTTGACAGTGCTGTGATGGCTCAGGTTCAGGCTATCACAGCTCAGTTAA
AGACAGCTCCTACACAGCCACCCGAGCAAAAAACTGCATTTGACAAGAAGCTGCTTGATAGATTCGATTA
CGATGACGAGCCAGAAGCTGTGGAAGACTCAAAGAAAGAGGATGCTGCAGCCATCAGCACCGCAGCCCTT
GCCACGGCTGCGCCTCCTGCACCCACTGCAGCCACACCTGCTGTTGCCACGGCTGTGCCTGTGCCCTCTG
CTACCTCTCCCCCTCCTCCACAGACCCCATTTGGGTACCCTGGAGATGGCGTGCAGCAGCCAGCATACAC
ACAGCATCAAAGTATGGACCAGTTTCAGCCTCGAATGATGCCAATACAGCAGGATACGATGCACCATCAG
GTTCCACTTCCTCCTAATGGACAGATGCCAGGATTTGGGCTTCTTTCTGCACCACCTCCATTTCCTCCCA
TGCCTCAGCCGGGGATGCCGCAGCCTGGGATGGCTCAGCCGGGATTGGCACAGCCGGGGATGGCTCAGCC
TACAATGCCACAGCCAGGGATGCCTCAGCCAGGGATGCCTCAGCCTGGGATGGCTCAGCCGGGATTGGCA
CAGCCGGGGATGGCTCAGCCTGGGATGCCTCAGCCTGCCATGCCTCAGCCTGCCATGCCTCAGCCGGGGA
TGGCTCAGCCTGGGGTTTCTCCAGCTCCACCAGTACAGCCAACTTTCCAATCAACTTTTCAGCCACAAAA
TGAACCCCATTCACAAAAACCACATCAGCAGGAAATGGAAGTAGAGCAGCCTTGTGTTACAGAGGTTAAG
CGGCATGTGCCCGAGAGCAGAAAGTCGAGATCCAGGTCAGCATCCAGGTCACCAAAAAGGAGAAGATCTA
GGTCTGGCTCTAGGTCTCGGAGATCCCGCCACCGTCGCTCTCGGTCTCGGTCCAGGGACAGGCGCCGACA
CTCACCTCGCTCTCGATCTCAAGAAAGACGGGATCGAGAAAAAGAGAGGGAACGGCGGCAGAAAGGCCTC
CCTCAGATCAAGTCAGAAACTGCAAGTGTTTGTAGTACCACACTGTGGGTGGGACAACTGGACAAAAGGA
CTACTCAGCAGGATGTTGCCAGTCTCTTAGAAGAGTTTGGTCCAATTGAATCGATTAATATGATTCCTCC
CAGGGGCTGTGCCTACATCGTCATGGTTCATAGACAAGATGCATACCGTGCCCTGCAGAAACTGAGCCGA
GGAAACTACAAGGTGAACCAGAAATCCATAAAGATTGCCTGGGCCTTGAACAAAGGAATAAAGGCGGATT
ATAAACAGTATTGGGATGTTGAACTTGGTGTCACTTACATTCCGTGGGACAAAGTCAAAGCTGAGGAGCT
GGAGAGTTTCTGTGAAGGAGGCATGCTGGACAGTGACACACTTAACCCAGATTGGAAAGGCATCCCCAAG
AAGCCTGACAATGAAGTTGCCCAGAATGGAGGTGCAGAAACCTCCCACACAGAGCCAGTTTCCCCCATAC
CTAAGCCTGTGCCTGTGCCGGTCCCTCCCATCCCTGTTCCTGCGCCTATAACAGTGCCACCTCCACAGGT
CCCGCCCCATCAGCCGGGCCCTCCTGTTGTCGGTGCTCTCCAGCCGCCCGCTTTCACCCCTCCCTTAGGA
ATGCCCCCTCCAGGCTTTGGCCCTGGCGTTCCTCCTCCCCCTCCTCCTCCACCATTTTTGCGCCCAGGAT
TCAACCCAATGCATTTACCACCAGGTTTCCTTCCTCCTGGACCCCCACCTCCTATAACTCCACCAGTATC
CATTCCTCCACCTCACACTCCACCAATAAGCATCCCAAACTCTACTATCGCTGGTATAAATGAAGACACT
ACAAAAGACTTATCTATTGGAAATCCCATTCCAACAGTGGTGTCTGGGGCTAGAGGAAATGCCGAGTCTG
GTGACAGTGCGAAAATGTATGGTTCTGCTGGGCCACCTGCTGCACCCACGAGTCTGCCCACCCCTCCTGT
AACCCAGCCTGTGTCACTGCTTGGCACTCAAGGAGTTGCACCGGGTCCTGTAATTGGGCTCCAGGCACCC
TCTACCGGTCTTCTTGGTGCCAGACCTGGCCTGATCCCACTCCAGCGCCCCCCAGGGATGCCTCCACCAC
ATTTGCAACGGTTCCCTATGATGCCACCTCGGCCCATGCCACCTCACATGATGCACAGGGGGCCACCACC
AGGACCAGGGGGCTTTGCCATGCCCCCACCTCATGGAATGAAAGGGCCCTTCCCACCACATGGCCCCTTT
GTTAGGCCTGGTGGGATGCCAGGGCTGGGGGGCCCAGGGCCAGGCCCGGGAGCATCAGAAGACAGAGATG
GAAGGCAGCAACAACCACAGCAGCAGCCACCGCCACAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCA
GCCACCACAGCAGTCACCATCACAGCAGCCAGCGCCAGCTCAGCAGCAGCCACCGCAGTTTAGAAATGAT
AGCAGGCAGCAGTTCAACTCAGGTAGAGACCAAGAAAGGTTTGGAAGAAGATCTTTTGGAAGTAGGGTGG
AAAATGACCGGGAACGGTATGGGAGCCGTAATGACGATAGAGATAATAGTAACCGTGAAAGGAGAGAGTG
GGGAAGAAGGAGCCCTGACCGGGACAGGCACAGAGACTTGGAAGAGAGAAGTAGACGCTCTAGTGGGCAT
CGGGACAGAGACAGGGATTCTAGAGATAGAGAGTCCCGTAGAGAGAAGGAAGAAAATCGAAAGGAGAAGC
ACGAGGTGGCAGACAGGGCAGGTGGTAACAAAGCTGTGGAACCTCCCCTTAGCCAAGTGGGAACCATAGA
CACTGTCTCAGAACTTAATAAGGGGGAGGCCATGGCCACGGTGGTAAAGCCTGAAGAGTCGCCTGCTGAG
GTTACCTCACCCGTTGGACCCGAGAAGGATCCTGGCTCAGCAGCAGAGCCTCCTCGCTAG

Translation (1209 aa):
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIV
RQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSN
AAPVAENVTNNEGSPPPPVKISSELAQAPTNSMPTVAQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQP
PQPQSPALDSAVMAQVQAITAQLKTAPTQPPEQKTAFDKKLLDRFDYDDEPEAVEDSKKEDAAAISTAAL
ATAAPPAPTAATPAVATAVPVPSATSPPPPQTPFGYPGDGVQQPAYTQHQSMDQFQPRMMPIQQDTMHHQ
VPLPPNGQMPGFGLLSAPPPFPPMPQPGMPQPGMAQPGLAQPGMAQPTMPQPGMPQPGMPQPGMAQPGLA
QPGMAQPGMPQPAMPQPAMPQPGMAQPGVSPAPPVQPTFQSTFQPQNEPHSQKPHQQEMEVEQPCVTEVK
RHVPESRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGL
PQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSR
GNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVKAEELESFCEGGMLDSDTLNPDWKGIPK
KPDNEVAQNGGAETSHTEPVSPIPKPVPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGALQPPAFTPPLG
MPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDT
TKDLSIGNPIPTVVSGARGNAESGDSAKMYGSAGPPAAPTSLPTPPVTQPVSLLGTQGVAPGPVIGLQAP
STGLLGARPGLIPLQRPPGMPPPHLQRFPMMPPRPMPPHMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPF
VRPGGMPGLGGPGPGPGASEDRDGRQQQPQQQPPPQQQQQQQQPQQQPPQQSPSQQPAPAQQQPPQFRND
SRQQFNSGRDQERFGRRSFGSRVENDRERYGSRNDDRDNSNRERREWGRRSPDRDRHRDLEERSRRSSGH
RDRDRDSRDRESRREKEENRKEKHEVADRAGGNKAVEPPLSQVGTIDTVSELNKGEAMATVVKPEESPAE
VTSPVGPEKDPGSAAEPPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH