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Report for CCDS37341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37341.1 Public Mus musculus 16 Cfap91 23 108 98 CCDS HistoryNCBI Gene:320214Re-query CCDS DB by CCDS ID:37341.1Re-query CCDS DB by GeneID:320214See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023501.15 ENSMUSP00000023501.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023501.15Link to Ensembl Protein Viewer:ENSMUSP00000023501.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023501Re-query CCDS DB by Protein ID:ENSMUSP00000023501
Original member Current member NCBI NM_001081025.1 NP_001074494.1 Accepted alive Link to Nucleotide Sequence:NM_001081025.1Link to Protein Sequence:NP_001074494.1Re-query CCDS DB by Nucleotide ID:NM_001081025Re-query CCDS DB by Protein ID:NP_001074494Link to BLAST:NP_001074494.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074494.1 783 Q8BRC6-2 783 100% 0 0

Chromosomal Locations for CCDS 37341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 38298084 38298295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38301968 38302059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38302617 38302765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38304779 38305000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38306716 38306862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38308082 38308153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38310992 38311108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38320249 38320391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38321371 38321553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38324137 38324294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38328208 38328385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38332168 38332349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38332754 38332810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38333742 38333825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38335504 38335661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38336344 38336420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38341657 38341777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2352 nt):
ATGAGCCAGACAGTGACCATCCAGGAACCCAGGCCCAATGATCAGAGGATTCCGTATCAATGCAGAGAGG
TG
CGGAGGGCCAAGGGCGGATTCGCCAATCGAACGTACGATTACCTGTACGACCCGTTATTTATTGTGTC
G
AGTGAGCGAGACCATGCACAGGCCAATATCCAAGCCACCCTGATTCGAAGCAGACTGAAAAAAGTTCCC
AAC
TTTCGGTCCATGTTCAGTAACCTGTTTCATCACCCAAGATACTCTATGTACTGGAGCAAGACAGACC
CT
GTCCCGTTGCACGTCACTCGAGAGTGGAGGGGACAAGAAGCCAAACACAAAGAAGTACTCCGGCTTCA
A
GCTGCGATGGACACTTCTTTCCAGATGCCCAAGGAAAAGGATGAAGATCCGGATGTTTCTGGAAAGAAC
CGC
TATAAGTTCTTTGACAGGCCCTTCCTGCCATTTCTTCAACAGATGCCTTTGAACGTTGTTTTATCAC
CA
GTCAAGACACAACCACTTCTTCTTACTCCCGAGTCTTCCAAGTACGCAATCATCCCTACCAAGTCCAC
T
GTGGCCACTCAGACTGATTACCGGGATGCAGACGTTCAAACAGATCCATACTCTCCAGAATATGTCGTG
TGT
CAAGACACCATCCCTGAGCTCTTGACCCTGGCTAATCTGACTTGGGGCCGAGGTCTCCCAGCAGGAC
AA
GCTGAGGTGGAAATAATAGAGCGGGCCCGGGAGAAGCGAGCTTGGGAAGCCACTCTGCCCCCACTGAA
T
GACAGTGTCCAGGCTGAGAAGAGGAGGAAGATGATGAACGCCATGGAGAGGAAGGAGTGGGCCTTCAGA
GAA
GGAGAGATTGAGAAACTGCAGGAACTGCGCCTGGAGGTTTTGAAACAGTTGCTGAAGAGGCGTGAGG
AG
GACCAGAATGAGCTGAACATGAGGCACCTGAACGATCAGTGGTATAAACTGCAGGAAGCCAAGGAGGC
C
AAAGTGGCGCAGATCCGTCACAAGCATGTATCAGACATCAGAAAACTCATGGGAAAGGGGAAGAACATA
GAA
GGGAAGCTGCAGCGGAGAGACATCATCTCGGACTACTCTAACTTTGCATCTCAGGTCTATGGACCTC
TG
TCTCGCCTTGGCCGTTTCCCAGACAACAACTCAGAGGACTTTGTAGTCAGAAACCACTATCTCAACAC
C
TATGAAGGATTAGTGGAACTTGAATCATCCCTCCCCGATTTTGTGACACAGCCAAGGATCAAACCTCCA
AAG
CCCCAAATCATTACCACCAAGGCCGGCTTTCTGAAGAGGACAGCCAGGATGGACTATGAGTTGGCAG
AA
GTTCACAAGGCACTAGTGGATAAGAAGAATAAAGGTCTAGAAGGAACGAAATCTCTGCGATTCCTGCA
A
AAAAATCCCATCTCTCAGGCTCGGCTTCCAACCCCCTCCTTGGAAATGACTTCCTATGAAGAAGGAGAA
ATA
GAAATGGCTGTGATCTACTTGCAGAAGCTACTCCGGGGCAGAGTCGTGCAGAACATGATGTTTGAGG
GC
AAGGAGAAGCGGCTGGAGTTGATCCTGGAGTTGCGCACCAGCCATGCCCTGCAAGAGGATGACAAGCT
A
GTGAAGAAAGCAGAGAAGCAAGTGACCCTGGCTCTGCAGCGGCAAAGGAACCTGCATGAGGACAAGTTG
TCA
GTGATTGAAAACCACTTGGGTGACCTGGAAGGAAGAGTGCTGGCGGATATGTTCGACTTCCTGTCCA
AA
GAGCTGGTGAGGTTGCAGGAGGAGAGGAGGATCCACGCCTTCGCCATGCTGGCTGAGCGCCAACGGCG
C
ATGCGGGAGGCAGAAGAGAGCGGTCGGCGCCAGGTGGAGCAAAAGCGCCTGCAGCAAGAGGACATGATA
TTC
AAGGAGGTGATTAAAGTTCACCAAAGTACGGTAACCTCCTACCTGGAAGACATCATACTGAACACCG
AG
GAGAGAACTGCAGAGGAACAAGCCAGAAAAGAAATCGAGAAGATCGCTGAGGAGATCAACAACATCGC
T
TATGAAATGGAGAACCGCCGAACCTACCTTCAGTCAGAGGAGATTGTTGCAGAGCTGGTTTACAGTTTT
CTC
ATCCCAGAGGTACAAAAAGACTTTGTCAAAGAGAAAGTGAGGAATGCGCAGCGGAAGCACATCCTGG
CA
GCCCATGAGATCATTCACAGCAACACCGAAACGATGCTGGAGGAGCAAGTCTATAAGGAACTGCAGTC
A
GAGGACTTTGAGCTAGAGGAGGAGGCTGAGAGCCTAGACTCTGAGGTGCCAACTGTCTCAGTCTCTAAA
ACA
TCAACTATAAAACCTACTCAGGATGAGGGAGAAGGCTAG


Translation (783 aa):
MSQTVTIQEPRPNDQRIPYQCREVRRAKGGFANRTYDYLYDPLFIVSSERDHAQANIQATLIRSRLKKVP
N
FRSMFSNLFHHPRYSMYWSKTDPVPLHVTREWRGQEAKHKEVLRLQA
AMDTSFQMPKEKDEDPDVSGKN
R
YKFFD
RPFLPFLQQMPLNVVLSPVKTQPLLLTPESSKYAIIPTKSTVATQTDYRDADVQTDPYSPEYVV
C
QDTIPELLTLANLTW
GRGLPAGQAEVEIIERAREKRAWEATLPPLNDSVQAEKRRKMMNAMERKEWAFR
E
GEIE
KLQELRLEVLKQLLKRREEDQNELNMRHLNDQWYKLQEAKEAKVAQIRHKHVSDIRKLMGKGKNI
E
GKLQRRDIISDYSNFASQVYGPLSRLGRFPDNNSEDFVVRNHYLNTYE
GLVELESSLPDFVTQPRIKPP
K
PQIITTKAGFLKRTARMDYELAEVHK
ALVDKKNKGLEGTKSLRFLQKNPISQARLPTPSLEMTSYEEGE
I
EMAVIYLQKLLRGRVVQNM
MFEGKEKRLELILELRTSHALQEDDKLVKKAEKQVTLALQRQRNLHEDKL
S
VIENHLGDLEGRVLADMFDFLSKELVRLQEERRIHAFAMLAERQRRMREAEESGRRQVEQKRLQQEDMI
F
KE
VIKVHQSTVTSYLEDIILNTEERTAEEQARKEIEKIAEEINNIAYEMENRRTYLQSEEIVAELVYSF
L
IPEVQKDFVKEK
VRNAQRKHILAAHEIIHSNTETMLEEQVYKELQSEDFELEEEAESLDSEVPTVSVSK
T
STIKPTQDEGEG




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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