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Report for CCDS37244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37244.1 Public Mus musculus 16 Glyr1 23 108 98 CCDS HistoryNCBI Gene:74022Re-query CCDS DB by CCDS ID:37244.1Re-query CCDS DB by GeneID:74022See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115844.2 ENSMUSP00000111510.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115844.2Link to Ensembl Protein Viewer:ENSMUSP00000111510.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115844Re-query CCDS DB by Protein ID:ENSMUSP00000111510
Original member Current member NCBI NM_001079814.1 NP_001073282.1 Accepted alive Link to Nucleotide Sequence:NM_001079814.1Link to Protein Sequence:NP_001073282.1Re-query CCDS DB by Nucleotide ID:NM_001079814Re-query CCDS DB by Protein ID:NP_001073282Link to BLAST:NP_001073282.1

Chromosomal Locations for CCDS 37244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 5015528 5015602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5018400 5018524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5018840 5019019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5019287 5019449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5020267 5020368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5021338 5021448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5026508 5026607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5029334 5029407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5029503 5029553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5030185 5030241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5031887 5031973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5036236 5036475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5036919 5037057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5047734 5047813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5048750 5048786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5049806 5049843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGGCGGCTGTGAGTCTGCGGCTCGGCGACTTGGTGTGGGGGAAACTGGGCCGGTATCCTCCCTGGCCAG
GA
AAGATTGTTAATCCACCCAAGGACTTAAAGAAACCACGTGGAAAGAAATGCTTCTTTGTGAAGTTTTT
T
GGAACAGAAGATCATGCCTGGATCAAAGTGGAACAGCTAAAGCCTTACCATGCTCACAAGGAGGAGATG
ATA
AAGATTAACAAGGGTAAACGGTTCCAGCAAGCTGTGGATGCTGTTGAAGAGTTCCTCAGGAGAGCCA
AA
GGGAAAGACCAGACATCATCCCACACTTCTGCTGATGACAAGAATCGGCGTAATTCCAGTGAGGAGAG
A
AGTAGGCCAAACTCAGGTGATGAGAAACGCAAGCTTAGCCTGTCTGAAGGGAAGGTGAAGAAGAACATG
GGA
GAAGGAAAGAAGAGGGTGACTTCAGGCTCTGCAGACAGAGGCTCCAAATGCCTTAAAAGAGCCCAAG
AG
CAAAGTCCCCGGAAGCGGGGTCGGCCCCCAAAGGATGAGAAGGACCTCACCATCCCTGAGTCTAGCAC
T
GTAAAGGGGATGATGGCTGGACCGATGGCTGCATTTAAATGGCAGCCAACAGCGACCGAGCCAGTCAAA
GAT
GCAGATCCTCATTTTCATCATTTTCTGTTGAGCCAAACAGAGAAGCCAGCTGTCTGTTACCAGGCAA
TC
ACAAAGAAGTTGAAAATATGTGAAGAGGAAACTGGTTCCACCTCCATCCAGGCAGCAGACAGCACAGC
T
GTGAATGGCAGCATTACACCCACAGACAAAAAGATAGGATTTTTGGGCCTTGGCTTAATGGGAAGTGGC
ATC
GTCTCCAACTTGCTAAAAATGGGTCACACAGTGACTGTCTGGAACCGGACTGCAGAGAAATGTGATT
TG
TTCATCCAGGAGGGGGCCCGCCTAGGAAGAACCCCCGCTGAAGTCGTTTCAACTTGTGACATCACTTT
T
GCCTGTGTGTCGGATCCAAAGGCAGCCAAGGACCTGGTGCTGGGCCCCAGCGGTGTGCTGCAAGGAATC
CGC
CCCGGGAAGTGCTATGTGGACATGTCAACGGTGGATGCGGATACAGTCACCGAGCTGGCCCAGGTGA
TT
GTATCCAGAGGGGGACGCTTTCTGGAAGCACCAGTCTCAGGGAATCAGCAACTGTCCAATGATGGGAT
G
TTGGTGATCTTAGCAGCCGGAGACAGGGGCTTGTATGAGGACTGCAGCAGCTGCTTCCAGGCAATGGGA
AAG
ACCTCCTTCTTTTTAGGTGAAGTTGGCAATGCAGCCAAGATGATGCTGATTGTGAACATGGTCCAAG
GG
AGCTTCATGGCCACCATTGCTGAGGGGCTCACGCTGGCCCAAGTGACAGGCCAATCACAGCAGACACT
C
TTGGACATCCTTAATCAGGGACAATTGGCCAGCATCTTTCTGGACCAGAAGTGCCAAAATATCCTACAA
GGA
AACTTTAAACCTGACTTCTACCTGAAATACATTCAGAAGGATCTCCGCCTGGCCATTGCATTGGGTG
AT
GCAGTCAACCACCCCACTCCCATGGCAGCTGCAGCCAATGAGGTATACAAAAGAGCCAAGGCACTGGA
C
CAGTCTGACAATGATATGTCTGCCGTGTACCGAGCCTACATACACTAA


Translation (552 aa):
MAAVSLRLGDLVWGKLGRYPPWPGKIVNPPKDLKKPRGKKCFFVKFFGTEDHAWIKVEQLKPYHAHKEEM
I
KINKGKRFQQAVDAVEEFLRRAKGKDQ
TSSHTSADDKNRRNSSEERSRPNSGDEKRKLSLSEGKVKKNM
G
EGKKRVTSGSADRGSKCLKRAQEQSPRKRGRPPKDEK
DLTIPESSTVKGMMAGPMAAFKWQPTATEPVK
D
ADPHFHHFLLSQTEK
PAVCYQAITKKLKICEEETGSTSIQAADSTAVNGSITPTDKKIGFLGLGLMGSG
I
VSNLLKMGHTVTVWNRTAEK
CDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGI
R
PGKCYVDMSTVDADTVTELAQ
VIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMG
K
TSFFL
GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQ
G
NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANE
VYKRAKALDQSDNDMSAVYRAYIH



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser