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Report for CCDS36038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36038.1 Public Mus musculus 10 Vezt 23 108 98 CCDS HistoryNCBI Gene:215008Re-query CCDS DB by CCDS ID:36038.1Re-query CCDS DB by GeneID:215008See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36038.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047711.12 ENSMUSP00000037955.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047711.12Link to Ensembl Protein Viewer:ENSMUSP00000037955.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047711Re-query CCDS DB by Protein ID:ENSMUSP00000037955
Original member Current member NCBI NM_172538.5 NP_766126.2 Accepted alive Link to Nucleotide Sequence:NM_172538.5Link to Protein Sequence:NP_766126.2Re-query CCDS DB by Nucleotide ID:NM_172538Re-query CCDS DB by Protein ID:NP_766126Link to BLAST:NP_766126.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766126.2 780 Q3ZK22-1 780 100% 0 0

Chromosomal Locations for CCDS 36038.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 93970193 93970704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93973835 93974042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93974445 93974545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93980314 93980507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93984162 93984493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93990140 93990287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93993517 93993654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93996838 93997113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94000351 94000523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94003993 94004082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94006960 94007094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94035670 94035705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2343 nt):
ATGACACCGGAGTTTGACGAAGAGGTGGTTTTTGAGAATTCTCCACTTTACCAGTACCTACAGGATTTGG
GACACACAGATTTTGAGATATGTTCTTCTTCGTCACCAAAACCAGAAAAATGCTTGACAACAGAGGGACC
TCAGCCGCCTCCCACCAGAGTCCTACAGAGACAAGGCATCCTGTTGAAACTGACAGAAACCATCAAGAGC
TGGACGTTTTCCTCTCAGCACAGTAAGAAAGATGACTTACTCCATAAGTTGGACACCGGGTTTCGGCTGG
ACTCACTGCATACCATCCTGCAGCAGGAAGTCCTGCTGCAAGAGGATGTGGAGCTGCTCGAGCTGCTTGA
CGCCAGCATCCTGTCTGCGGGGCAGCCTCAACAGGAAAGTGGACACCTTCCAACGCTCTGCTCCCTGGCA
ACCCCGAACACTTGGGATGTCTCGCTGCTGTTTGCCTTCATTAGTTTGCTCATCATGTTTCCCACGTGCT
GGATTGTGTCCTCCTGGCTGGTGTGGGGAATAATTCTATTTCTTTACTTGATCATACGAGTTTTGAAATT
ATGGAGGACAGCCAAACTGCAAATGACTCTGAAAAAATATAGGGTACGTTTGGAAGACATGGCAGCCAAT
AGCCGAGCCTTCACCAACCTTGTGAGAAAATCACTGCGTCTCATCCAAGAAACTGAAGTCATTTCCAGGG
GATTTACTCTGGTCAGTGCTGCTTGCTCATTTAATAAGGCTGCACAGCATCCCGGCCAGCATCTCATCGG
CCTTCGGAAAGCCGTCTACAGGACCGTAAGAGCCAACTTTCAAGCCGCAAGGCTAGCTACCTTGTACATG
CTGAAAAACTACCCCCTGAACTCTGAGAGTGACAATGTCACCAACTACATCTGTGTGGTACCTTTTAAGG
AGCTGGGGCTTGGACTCAGTGAAGACCAGATCTCAGAAGAGGAAGCTCGTAACCTGACAGATGGCTTCAG
CCTGCCTGCCTTGAAGGTTTTGTTCCAGCTCTGGGTGGCACAGAGTTCAGAGTTCTTCAGACGCCTGGCC
CTGTTACTTTCTACAGCGAATTCGCCTTCAGGGCCCTTACTCACTGCTGCACTTCTGCCTCATCATATCC
TCTGTGACGTGACTCAAGGTCTACCTCATGCTCACTCTGCCTGCTTGGATGAGCTGAAGCGCAGCTATGA
GTTCTTCCGGTACTTTGAAACTCAGCACCAGTCAGTCCCCCAGCGCTTATCCAAGACTCCGCAGAAGTCG
AGGGAGCTGAGCAACGTCCACACAGCAGTCCGTAGCTTACAGCTCCATCTGAAAGCACTACTGAATGAAG
TAATAATTCTTGAAGATGAACTTGAAAAGCTCGTTTGTACTAAAGAAACACAAGAGCTGCTATCGGAGGC
TTATCCGATACTAGAGCAGAAATTAAAACTGATTGAACCACACGTTCAGGCCAGCAACAGTTGCTGGGAG
GAAGCCATTTCTCAAGTGGATAAACTGCTCCGGAGGAACACAGATAAAAAAGGCAAGCCTGGAGTAGCCT
GTGAGAACCCACACTGCACCGCGGAGCCCTTGGTGCGGCCAGCTCTACACATTGAGGACAGAGACCCCAT
CCCTGAGGAGCAGGAATTAGAAGCTTATGTGGATGACATAGACATAGAAAGTGAGTTCCGAAAGGACGAT
TTCTATCACTTGTCTCAGGAAGACAGAGAGAGACAGAAGCGCGAGCAGGAGGAGTCCAGGCGGGTGCTGC
AGGAGCTGAAGTCTGTGCTGGGATTTAAGGCTTCCGAGGCTGAGAGGCAGAAGTGGAAGCAGCTGCTGTT
CAGTGACCACGCTGTGTTGACATCCTTGTCTCCTGTAGACCCAGTGGAATCTGTAAGTAACTCAGAACCA
CCCATGAATTCAGATACAGAAAAAGTCAATAGTAATGCTACTGAAGAGGAGACTAGTAAGCCCTGTGCCG
GCGACAAGGAAGACAGTAGGACTGAGTATGTGTGTGACAGCCCAACAGAGGGGCCAAGCAAAGACACCTC
TGCAGACACAGGCCTCCTCCTTCCAGGAGCCGAGGAAACCATGTGCCACCAGCATGAGAGTGAGGCTAAG
TCTCCTCAGGCTGCTGCTGCGGGGGCCACTGCCCCTCCGACTCCCAGGGACACACTGCAACTCTCCATTA
AGCAGAGGCTGGCTCGACTCCAGTTGCCACCAGAATTCACCTTCTCTGCTGGCCTGGCTGCAGAAGTGGC
CGCCCGGTCCCTGTCCTTTACCACCATGCAGGAACAAACTTTTGGCGACGAGGAGGAAGAACAGCTAGTT
GAAGGCGGTGAAAATGAGGTGGAGGAAAAATAA

Translation (780 aa):
MTPEFDEEVVFENSPLYQYLQDLGHTDFEICSSSSPKPEKCLTTEGPQPPPTRVLQRQGILLKLTETIKS
WTFSSQHSKKDDLLHKLDTGFRLDSLHTILQQEVLLQEDVELLELLDASILSAGQPQQESGHLPTLCSLA
TPNTWDVSLLFAFISLLIMFPTCWIVSSWLVWGIILFLYLIIRVLKLWRTAKLQMTLKKYRVRLEDMAAN
SRAFTNLVRKSLRLIQETEVISRGFTLVSAACSFNKAAQHPGQHLIGLRKAVYRTVRANFQAARLATLYM
LKNYPLNSESDNVTNYICVVPFKELGLGLSEDQISEEEARNLTDGFSLPALKVLFQLWVAQSSEFFRRLA
LLLSTANSPSGPLLTAALLPHHILCDVTQGLPHAHSACLDELKRSYEFFRYFETQHQSVPQRLSKTPQKS
RELSNVHTAVRSLQLHLKALLNEVIILEDELEKLVCTKETQELLSEAYPILEQKLKLIEPHVQASNSCWE
EAISQVDKLLRRNTDKKGKPGVACENPHCTAEPLVRPALHIEDRDPIPEEQELEAYVDDIDIESEFRKDD
FYHLSQEDRERQKREQEESRRVLQELKSVLGFKASEAERQKWKQLLFSDHAVLTSLSPVDPVESVSNSEP
PMNSDTEKVNSNATEEETSKPCAGDKEDSRTEYVCDSPTEGPSKDTSADTGLLLPGAEETMCHQHESEAK
SPQAAAAGATAPPTPRDTLQLSIKQRLARLQLPPEFTFSAGLAAEVAARSLSFTTMQEQTFGDEEEEQLV
EGGENEVEEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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