NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS34345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34345.1 Public Homo sapiens 6 RNF144B 24 110 108 CCDS HistoryNCBI Gene:255488Re-query CCDS DB by CCDS ID:34345.1Re-query CCDS DB by GeneID:255488See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34345.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259939.4 ENSP00000259939.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259939.4Link to Ensembl Protein Viewer:ENSP00000259939.4Re-query CCDS DB by Nucleotide ID:ENST00000259939Re-query CCDS DB by Protein ID:ENSP00000259939
Original member Current member NCBI NM_182757.4 NP_877434.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182757.4Link to Protein Sequence:NP_877434.2Re-query CCDS DB by Nucleotide ID:NM_182757Re-query CCDS DB by Protein ID:NP_877434Link to BLAST:NP_877434.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_877434.2 303 Q7Z419-1 303 100% 0 0

Chromosomal Locations for CCDS 34345.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 18399535 18399699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18427581 18427685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18439684 18439744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18457155 18457359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18459607 18459751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18463291 18463380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 18464927 18465067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGGCTCAGCTGGTAGGCTCCACTATCTCGCCATGACTGCTGAAAATCCCACTCCTGGAGACCTGGCTC
CGGCCCCCCTCATCACTTGCAAACTCTGCCTGTGTGAGCAGTCTCTGGACAAGATGACCACACTCCAGGA
ATGCCAGTGCATCTTTTGCACAGCTTGCCTGAAACAGTACATGCAGCTGGCAATCCGAGAAGGATGTGGG
TCTCCCATCACTTGCCCTGACATGGTGTGCCTAAACCACGGGACCCTGCAGGAAGCTGAGATTGCCTGTT
TGGTACCTGTGGACCAGTTTCAACTTTATCAGAGGTTAAAATTTGAAAGAGAAGTTCATCTGGACCCCTA
CCGAACATGGTGTCCTGTTGCAGACTGTCAGACAGTGTGCCCTGTTGCCTCGAGTGACCCAGGACAGCCT
GTGCTGGTGGAATGCCCTTCTTGCCACCTGAAATTCTGCTCGTGTTGCAAGGATGCTTGGCATGCAGAGG
TCTCCTGTAGAGACAGTCAGCCTATTGTCCTGCCAACAGAGCACCGAGCCCTCTTTGGGACAGATGCAGA
AGCCCCCATTAAGCAGTGCCCAGTTTGCCGGGTTTATATCGAACGCAATGAAGGCTGCGCTCAGATGATG
TGCAAAAACTGCAAGCATACATTTTGCTGGTACTGCCTCCAGAACTTGGATAATGACATTTTCCTCAGAC
ATTATGACAAAGGGCCATGCAGGAATAAACTTGGCCACTCAAGAGCATCAGTGATGTGGAACCGAACACA
GGTGGTGGGGATTCTCGTAGGCTTGGGCATCATTGCCTTGGTTACTTCACCCTTGTTACTCCTGGCCTCC
CCATGTATAATCTGTTGTGTCTGCAAGTCCTGTCGGGGCAAGAAGAAAAAGCACGACCCATCCACAACCT
AA

Translation (303 aa):
MGSAGRLHYLAMTAENPTPGDLAPAPLITCKLCLCEQSLDKMTTLQECQCIFCTACLKQYMQLAIREGCG
SPITCPDMVCLNHGTLQEAEIACLVPVDQFQLYQRLKFEREVHLDPYRTWCPVADCQTVCPVASSDPGQP
VLVECPSCHLKFCSCCKDAWHAEVSCRDSQPIVLPTEHRALFGTDAEAPIKQCPVCRVYIERNEGCAQMM
CKNCKHTFCWYCLQNLDNDIFLRHYDKGPCRNKLGHSRASVMWNRTQVVGILVGLGIIALVTSPLLLLAS
PCIICCVCKSCRGKKKKHDPSTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH