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Report for CCDS29212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29212.1 Public Mus musculus 18 Pou4f3 23 108 98 CCDS HistoryNCBI Gene:18998Re-query CCDS DB by CCDS ID:29212.1Re-query CCDS DB by GeneID:18998See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29212.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025374.3 ENSMUSP00000025374.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025374.3Link to Ensembl Protein Viewer:ENSMUSP00000025374.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025374Re-query CCDS DB by Protein ID:ENSMUSP00000025374
Original member Current member NCBI NM_138945.2 NP_620395.2 Accepted alive Link to Nucleotide Sequence:NM_138945.2Link to Protein Sequence:NP_620395.2Re-query CCDS DB by Nucleotide ID:NM_138945Re-query CCDS DB by Protein ID:NP_620395Link to BLAST:NP_620395.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620395.2 338 Q63955 338 100% 0 0

Chromosomal Locations for CCDS 29212.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 42394643 42394762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 42395114 42396010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGATGGCCATGAACGCCAAGCAGCCTTTCGGCATGCACCCCGTACTGCAAGAACCCAAATTCTCCAGCC
TACACTCCGGCTCTGAGGCCATGCGCCGAGTTTGTCTCCCAGCCCCGCAGCTGCAGGGTAATATATTTGG
AAGCTTTGATGAGAGCCTGCTGGCACGCGCCGAAGCTCTGGCGGCGGTGGATATCGTCTCCCACGGCAAG
AATCATCCGTTCAAGCCCGACGCCACCTACCATACCATGAGCAGCGTGCCCTGCACTTCTACCTCGCCCA
CGGTGCCCATCTCTCACCCGGCTGCACTCACCTCGCACCCGCATCACGCGGTACATCAGGGCCTCGAGGG
CGACTTACTTGAGCACATCTCGCCCACGCTGAGCGTGAGTGGCCTAGGGGCCCCGGAGCACTCGGTGATG
CCGGCGCAGATCCACCCGCATCATCTAGGCGCCATGGGCCACTTGCATCAGGCCATGGGCATGAGTCACC
CGCATGCCGTAGCACCGCACAGTGCCATGCCCGCGTGTCTCAGCGATGTGGAGTCAGACCCTCGAGAGCT
GGAAGCGTTCGCCGAGCGCTTCAAGCAGAGGCGCATCAAGTTGGGGGTCACCCAGGCGGACGTGGGCGCG
GCTTTAGCCAATCTTAAGATCCCCGGTGTGGGCTCGCTCAGCCAGAGCACCATCTGCAGGTTCGAGTCTC
TTACTCTGTCGCACAACAACATGATCGCTCTCAAGCCGGTCCTCCAGGCCTGGCTGGAGGAGGCCGAGGC
CGCCTACCGAGAGAAGAACAGCAAGCCAGAGCTCTTCAACGGCAGTGAGCGTAAGCGCAAACGCACGTCC
ATCGCCGCGCCAGAGAAGCGCTCACTCGAAGCCTATTTCGCCATCCAGCCACGTCCTTCATCCGAGAAGA
TCGCGGCCATCGCGGAGAAACTGGACCTTAAAAAGAATGTGGTGAGGGTCTGGTTCTGTAACCAGAGACA
GAAACAGAAACGAATGAAATACTCTGCTGTCCACTGA

Translation (338 aa):
MMAMNAKQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEALAAVDIVSHGK
NHPFKPDATYHTMSSVPCTSTSPTVPISHPAALTSHPHHAVHQGLEGDLLEHISPTLSVSGLGAPEHSVM
PAQIHPHHLGAMGHLHQAMGMSHPHAVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGA
ALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTS
IAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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