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Report for CCDS27683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27683.1 Public Mus musculus 15 Srebf2 23 108 98 CCDS HistoryNCBI Gene:20788Re-query CCDS DB by CCDS ID:27683.1Re-query CCDS DB by GeneID:20788See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27683.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023100.7 ENSMUSP00000023100.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023100.7Link to Ensembl Protein Viewer:ENSMUSP00000023100.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023100Re-query CCDS DB by Protein ID:ENSMUSP00000023100
Original member NCBI NM_033218.1 NP_150087.1 Updated not alive Link to Nucleotide Sequence:NM_033218.1Link to Protein Sequence:NP_150087.1Re-query CCDS DB by Nucleotide ID:NM_033218Re-query CCDS DB by Protein ID:NP_150087
Current member NCBI NM_033218.2 NP_150087.1 Accepted alive Link to Nucleotide Sequence:NM_033218.2Link to Protein Sequence:NP_150087.1Re-query CCDS DB by Nucleotide ID:NM_033218Re-query CCDS DB by Protein ID:NP_150087Link to BLAST:NP_150087.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_150087.1 1130 Q3U1N2-1 1130 100% 0 0

Chromosomal Locations for CCDS 27683.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82147403 82147490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82169738 82170154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82171102 82171283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82172753 82172899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82175097 82175318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82177156 82177270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82177406 82177587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82178717 82178909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82179366 82179547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82181981 82182257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82185264 82185433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82192206 82192374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82194045 82194162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82194915 82195024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82196160 82196292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82197618 82197786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82199635 82199820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82203185 82203296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82203697 82203917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3393 nt):
ATGGATGAGAGCAGCGAGCTGGGCGTTCTGGAGACCATGGAGACCCTCACGGAGCTGGGCGATGAGCTGA
CTCTCGGGGACATCGACGAGATGCTACAGTTTGTCAGCAATCAAGTGGGAGAGTTCCCTGATTTGTTTTC
AGAGCAACTTTGTAGCTCCTTCCCTGGAGGTGGCAGCAATGGTGGCAGTGGCAACAACAGCAGTGGCAGA
GGCAACAATGGTGGAGCCACAGACCCTGCAGTACAGCGGTCATTCAGCCAGGTCCCATTATCTACCTTCT
CTCCCTCAGCTGCCTCCCCTCAGGCTCCGGCCCTGCAGGTCAAAGTCTCTCCTACCCCACCAAGGGCAAC
CCCTGTTCTCCAGCCGCGACCCCAGCCCCAGCCCCAACCTCCAGCTCAGCTGCAGCAGCAGACGGTGATG
ATCACCCCGACGTTCAGCACCGCTCCGCAGACGAGGATCATCCAGCAGCCTTTGATATACCAGAACGCAG
CGACCAGCTTTCAAGTCCTGCAGCCTCAAGTGCAAAGCCTCGTGACGTCCCCGCAGGTGCAGCCCGTCAC
CATCCAGCAGCAGGTGCAGACGGTACAGGCCCAGCGGGTGTTGACGCAGACAGCCAATGGCACACTGCAG
ACCCTTGCCCCCGCCACGGTACAGACGGTCGCTGCGCCACAGGTGCAGCAGGTCCCGGTCCTGGTGCAAC
CTCAGATCATTAAGACAGATTCCCTTGTGTTGACCACGCTGAAGACAGATGGCAGCCCTGTCATGGCTGC
AGTCCAGAACCCGGCCCTCACGGCCCTCACTGCCCCCATCCAGACAGCCGCCCTTCAAGTGCCAACCCTG
GTGGGCAGCAACGGGACCATTCTGACCACAATGCCTGTGATGATGGGGCAAGAGAAAGTTCCTATCAAGC
AAGTGCCTGGCGGCGTGAAGCAGCTGGATCCTCCCAAAGAAGGAGAGAGGCGGACAACACACAATATCAT
TGAAAAGCGCTACCGGTCCTCCATCAACGACAAAATCATAGAGTTGAAGGACTTAGTCATGGGGACAGAT
GCCAAGATGCACAAGTCTGGCGTTCTGAGGAAGGCCATTGATTACATCAAATATCTGCAGCAGGTCAATC
ACAAGCTGCGCCAGGAGAACATGGTGCTGAAGCTGGCCAATCAGAAAAACAAGCTCCTGAAGGGCATCGA
CCTGGGCAGTCTGGTGGACAGTGATGTGGACTTGAAAATTGATGACTTTAACCAGAATGTCCTTCTGATG
TCTCCGCCGGCCTCCGACTCCGGGTCCCAGGCCGGCTTCTCTCCCTATTCCATTGACTCTGAGCCGGGCA
GCCCTCTGCTGGATGACGCAAAGGTCAAGGATGAACCGGACTCTCCTCCTGTGGCACTGGGCATGGTGGA
CCGCTCTCGAATCCTCTTATGTGTCCTCACCTTCCTGGGCCTCTCCTTTAACCCCTTGACTTCCTTGCTG
CAGTGGGGAGGGGCCCACAACACTGACCAGCACCCATACTCAGGCTCGGGCCGCAGTGTACTGTCACTGG
AGTCAGGTGCTGGGGGCTGGTTTGACTGGATGGTTCCAACTCTCCTCCTGTGGCTGGTAAATGGTGTGAT
TGTCTTGAGCGTCTTTGTGAAGCTGTTGGTCCACGGGGAGCCGGTGATTCGCCCACACTCACGCCCCTCA
GTCACCTTCTGGAGACACCGGAAGCAGGCAGACCTAGACCTCGCCAAAGGTGATTTCGCAGCTGCTGCTG
CCAACCTACAAACCTGCTTATCCGTGCTGGGCCGGGCGCTGCCCACCTCCCGCCTGGACTTGGCCTGCAG
CCTCTCCTGGAATGTGATCCGCTACAGCCTGCAGAAGCTGCGCCTGGTACGCTGGTTACTCAAGAAGGTC
TTCCAGCGCTGGCGGGCTACTCCCGCCACTGCAGCTGGCTTTGAGGATGAGGCTAAGAGCAGCGCAAGGG
ATGCGGCACTGGCCTACCACAGGCTGCACCAGCTGCACATCACAGGGAAGCTTCCGGCGGGATCTGCCTG
TTCAGATGTGCACATGGCTCTGTGTGCTGTGAACCTGGCCGAGTGTGCGGAGGAGAAAATCCTACCAAGC
ACACTGATTGAGATCCACCTGACAGCGGCCATGGGGCTCAAGACCCGCTGTGGAGGCAAGCTGGGCTTCT
TGGCTAGCTACTTCTTAAATCGTGCCCAGAGTCTGTGTGGCCCAGAGCATAGCACTGTCCCCGACTCCCT
GCGCTGGCTATGCCATCCCTTGGGCCAGAAGTTTTTCATGGAGCGAAGCTGGTCGATCAAGTCAGCAGCC
AAGGAGAGCCTGTACTGCGCCCAGAGGAGCCCAGCTGACCCCATTGCCCAGGTACACCAGGCGTTCTGCA
AAAACCTGCTAGAAAGAGCGGTGGAGTCCTTGGTGAAACCTCAGGCCAAGAAGAAGGCAGGCGACCAGGA
AGAAGAGAGCTGTGAATTTTCCAGTGCTCTAGAGTATTTGAAATTACTTCATTCTTTTGTGGACTCTGTG
GGATTTGTGACCTCACCATTCTCCAGCAGTTCCGTGCTCAGGTCGGCCCTTGGCCCCGATGTCATCTGCC
GGTGGTGGACGTCCGCAGTCACCATGGCCATCAGCTGGCTCCAGGGAGACGATGCAGCTGTGCGCTCTCG
TTTTACTGAAGTAGAGCGGGTCCCCAAGGCCCTGGAAGTGACCGAGAGTCCCTTGGTGAAGGCCGTCTTC
TATACCTGTAGAGCCATGCATGCCTCCCTCTCTGGGAAAGCTGACGGGCAGCAGAACTCCTTCTGTCACT
GTGAGAGGGCCAGTGGTCACCTGTGGAGCAGTCTCAACGTCAGCGGCACTACTTCTGATCCTTCACTTAA
CCATGTGATCCAGCTGTTCACCTGTGACCTGCTACTGTCGCTGAGGACAGCACTCTGGCAAAAGCAGGCC
AGTGCCAGCCAGCTCCTGGGTGAGACCTACCATGCATCCGGCACTGAGCTGGCCGGCTTCCAGCGGGACC
TGGGCAGCCTTCGAAGGCTGGCCCATAGCTTCCGCCCAGCCTACCGCAAGGTGTTCCTGCATGAAGCCAC
TGTGCGCCTGATGGCAGGAGCCAGCCCTACCCGTACACACCAGCTGCTGGAGCATAGCCTACGGCGGCGC
CCCACTCAGAACACCAAGCATGGAGAGGTAGACACCTGGCCTGGCCAACGAGAGCGAGCTACTGCCATCC
TGCTGGCCTGCCGCCATCTTCCCCTCTCTTTCCTGTCTTCCCCGGGCCAGCGGGCAGTGCTGCTGGCTGA
AGCTGCCCGCACCCTGGAGAAGGTGGGTGACCGCCGTTCCTGCAGTGACTGCCAGCAGATGATTGTCAAG
CTGGGCGGTGGCACTGCCATCGCTGCCTCCTGA

Translation (1130 aa):
MDESSELGVLETMETLTELGDELTLGDIDEMLQFVSNQVGEFPDLFSEQLCSSFPGGGSNGGSGNNSSGR
GNNGGATDPAVQRSFSQVPLSTFSPSAASPQAPALQVKVSPTPPRATPVLQPRPQPQPQPPAQLQQQTVM
ITPTFSTAPQTRIIQQPLIYQNAATSFQVLQPQVQSLVTSPQVQPVTIQQQVQTVQAQRVLTQTANGTLQ
TLAPATVQTVAAPQVQQVPVLVQPQIIKTDSLVLTTLKTDGSPVMAAVQNPALTALTAPIQTAALQVPTL
VGSNGTILTTMPVMMGQEKVPIKQVPGGVKQLDPPKEGERRTTHNIIEKRYRSSINDKIIELKDLVMGTD
AKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQKNKLLKGIDLGSLVDSDVDLKIDDFNQNVLLM
SPPASDSGSQAGFSPYSIDSEPGSPLLDDAKVKDEPDSPPVALGMVDRSRILLCVLTFLGLSFNPLTSLL
QWGGAHNTDQHPYSGSGRSVLSLESGAGGWFDWMVPTLLLWLVNGVIVLSVFVKLLVHGEPVIRPHSRPS
VTFWRHRKQADLDLAKGDFAAAAANLQTCLSVLGRALPTSRLDLACSLSWNVIRYSLQKLRLVRWLLKKV
FQRWRATPATAAGFEDEAKSSARDAALAYHRLHQLHITGKLPAGSACSDVHMALCAVNLAECAEEKILPS
TLIEIHLTAAMGLKTRCGGKLGFLASYFLNRAQSLCGPEHSTVPDSLRWLCHPLGQKFFMERSWSIKSAA
KESLYCAQRSPADPIAQVHQAFCKNLLERAVESLVKPQAKKKAGDQEEESCEFSSALEYLKLLHSFVDSV
GFVTSPFSSSSVLRSALGPDVICRWWTSAVTMAISWLQGDDAAVRSRFTEVERVPKALEVTESPLVKAVF
YTCRAMHASLSGKADGQQNSFCHCERASGHLWSSLNVSGTTSDPSLNHVIQLFTCDLLLSLRTALWQKQA
SASQLLGETYHASGTELAGFQRDLGSLRRLAHSFRPAYRKVFLHEATVRLMAGASPTRTHQLLEHSLRRR
PTQNTKHGEVDTWPGQRERATAILLACRHLPLSFLSSPGQRAVLLAEAARTLEKVGDRRSCSDCQQMIVK
LGGGTAIAAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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