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Report for CCDS25295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25295.1 Public Mus musculus 11 Hoxb6 23 108 98 CCDS HistoryNCBI Gene:15414Re-query CCDS DB by CCDS ID:25295.1Re-query CCDS DB by GeneID:15414See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25295.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000704.5 ENSMUSP00000000704.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000704.5Link to Ensembl Protein Viewer:ENSMUSP00000000704.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000000704Re-query CCDS DB by Protein ID:ENSMUSP00000000704
Original member Current member EBI ENSMUST00000173432.2 ENSMUSP00000133281.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173432.2Link to Ensembl Protein Viewer:ENSMUSP00000133281.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173432Re-query CCDS DB by Protein ID:ENSMUSP00000133281
Original member Current member NCBI NM_008269.2 NP_032295.1 Accepted alive Link to Nucleotide Sequence:NM_008269.2Link to Protein Sequence:NP_032295.1Re-query CCDS DB by Nucleotide ID:NM_008269Re-query CCDS DB by Protein ID:NP_032295Link to BLAST:NP_032295.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032295.1 224 P09023 224 100% 0 0

Chromosomal Locations for CCDS 25295.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96299177 96299591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96300669 96300928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGAGTTCCTATTTCGTGAACTCCACCTTCCCCGTCACTCTGGCCAGCGGGCAGGAGTCCTTCCTGGGCC
AG
CTGCCGCTCTACTCGTCTGGCTATGCGGACCCGCTGCGGCACTACCCCGCGCCTTATGGGCCGGGACC
C
GGCCAGGACAAGGGCTTTGCGGCGTCCTCCTATTACCCACCAGCCGGCGGCGGCTACGGCCGGGCGGCG
CCC
TGTGATTATGGGCCGGCGCCTGCCTTCTACCGGGAGAAGGACGCGGCCTGCGCTCTCTCCGGCGCCG
AC
GAGCCGCCCCCGTTCCACCCCGAGCCGCGCAAGTCCGACTGCGCACAGGACAAGAGCGTGTTCGGAGA
G
ACCGAGGAGCAGAAGTGCTCCACGCCCGTCTACCCGTGGATGCAGCGCATGAATTCGTGCAACAGTTCC
TCT
TTTGGGCCCAGCGGTCGGCGAGGCCGCCAGACCTACACACGCTACCAGACCCTGGAGCTGGAGAAGG
AA
TTTCACTATAATCGCTACCTGACCCGCCGGCGGCGCATAGAGATCGCGCACGCCCTGTGCCTGACCGA
G
CGGCAGATCAAGATTTGGTTTCAGAACCGGCGCATGAAGTGGAAAAAGGAGAGCAAACTGCTCAGTGCG
TCT
CAGCTCAGTGCGGAGGAGGAGGAGGAAAAGCCAGCCGAGTGA


Translation (224 aa):
MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFAASSYYPPAGGGYGRAA
P
CDYGPAPAFYREKDAACALSGADEPPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCN
SS
S
FGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSA
S
QLSAEEEEEKPAE




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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