NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23586.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23586.1 Public Mus musculus 9 Stac 23 108 98 CCDS HistoryNCBI Gene:20840Re-query CCDS DB by CCDS ID:23586.1Re-query CCDS DB by GeneID:20840See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23586.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035083.7 ENSMUSP00000035083.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035083.7Link to Ensembl Protein Viewer:ENSMUSP00000035083.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035083Re-query CCDS DB by Protein ID:ENSMUSP00000035083
Original member NCBI NM_016853.3 NP_058549.1 Updated not alive Link to Nucleotide Sequence:NM_016853.3Link to Protein Sequence:NP_058549.1Re-query CCDS DB by Nucleotide ID:NM_016853Re-query CCDS DB by Protein ID:NP_058549
Current member NCBI NM_016853.4 NP_058549.1 Accepted alive Link to Nucleotide Sequence:NM_016853.4Link to Protein Sequence:NP_058549.1Re-query CCDS DB by Nucleotide ID:NM_016853Re-query CCDS DB by Protein ID:NP_058549Link to BLAST:NP_058549.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058549.1 403 P97306 403 100% 0 0

Chromosomal Locations for CCDS 23586.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 111562629 111562727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111572264 111572401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111572501 111572552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111588805 111588893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111593720 111593784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111602513 111602591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111604059 111604174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111605310 111605391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111606821 111606921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111634806 111635085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111689998 111690108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGATTCCTCCAAGTGGCGCCCGCGAGGACAGCGGAGACGGACTGACCGGGGAGGCAACGGGCACAGAGC
AGCCGCCCTCTCCTGCGTCCACCAGCAGCCTGGAATCCAAGCTCCAGAAACTAAAACGGTCACTTTCTTT
CAAGACCAAGAGCTTGCGGAGCAAAAGTGCTGACAACTTCTTCCCAAGAACCAACAGTGATGTGAAACCG
CAAGCAGACCTGCTGGCCAAGGCCAGCCCAGGCCCCAGCCCAATAGCCATCCCTGGAAGCCCAGCGTCCA
TGCCCACCAAGGCTGGCCTGCACCCCGGCAGCAACAGCAAGCTCCACGCCTTTCAGGAGCATGTCTTTAA
GAAGCCCACCTTCTGTGATGTCTGCAACCACATGATCGTGGGAACACATGCTAAGCACGGACTGCGCTGC
GGAGCCTGTAAGATGAGCATCCACCACAAGTGTGCAGATGGCCTGGCGCCCCAGCGGTGCATGGGCAAGT
TGCCAAAGGGATTTCGGCGTTACTACAGCTCCCCCTTGCTCATTCACGAACAGTTTGGATGCATTAAAGA
AGTTATGCCCATTGCGTGTGGCAATAAAGTGGACCCCGTGTATGAGGCCCTCCGGTTCGGCACGTCCCTG
GCCCAGAGAACGAAGAAGGGCGGCTCAGGCAGTGGTTCTGACTCACCGCCCAGAACCTCGACTTCAGAGC
TTGTAGACGTCCCTGAAGAGGCCGATGGGCCAGGAGATGGATCTGACATGAGGACACGGAGCAACAGTGT
GTTTACATATCCAGAAAACGGTATGGATGACTTCAGAGATCAAATGAAGACCACAAACCACCAGGGACCT
CTTTCCAAAGACCCATTACAGATGAACACCTACGTTGCCTTGTACAGATTTATACCACAGGAGAATGAAG
ACTTGGAAATGAGGCCAGGAGACATGATCACTCTCCTAGAAGACTCCAATGAAGACTGGTGGAAAGGAAA
GATTCAGGACAGGGTTGGTTTCTTTCCAGCCAACTTTGTTCAGAGAGTAGAAGAGCATGAGAAGATTTAT
AGGTGTGTTCGAACCTTCATTGGCTGCAAGGACCAGGGGCAGATAACACTGAAAGAGAACCAGATATGCG
TGACCTCTGAGGAAGAACAGGACGGCTTCATCAGAGTCCTCAGTGGGAAGAAGAGAGGCCTCGTCCCACT
GGATGTACTGGTAGACGTGTGA

Translation (403 aa):
MIPPSGAREDSGDGLTGEATGTEQPPSPASTSSLESKLQKLKRSLSFKTKSLRSKSADNFFPRTNSDVKP
QADLLAKASPGPSPIAIPGSPASMPTKAGLHPGSNSKLHAFQEHVFKKPTFCDVCNHMIVGTHAKHGLRC
GACKMSIHHKCADGLAPQRCMGKLPKGFRRYYSSPLLIHEQFGCIKEVMPIACGNKVDPVYEALRFGTSL
AQRTKKGGSGSGSDSPPRTSTSELVDVPEEADGPGDGSDMRTRSNSVFTYPENGMDDFRDQMKTTNHQGP
LSKDPLQMNTYVALYRFIPQENEDLEMRPGDMITLLEDSNEDWWKGKIQDRVGFFPANFVQRVEEHEKIY
RCVRTFIGCKDQGQITLKENQICVTSEEEQDGFIRVLSGKKRGLVPLDVLVDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH