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Report for CCDS21759.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21759.1 Public Mus musculus 7 Copb1 23 108 98 CCDS HistoryNCBI Gene:70349Re-query CCDS DB by CCDS ID:21759.1Re-query CCDS DB by GeneID:70349See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21759.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033012.8 ENSMUSP00000033012.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033012.8Link to Ensembl Protein Viewer:ENSMUSP00000033012.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033012Re-query CCDS DB by Protein ID:ENSMUSP00000033012
Original member Current member NCBI NM_033370.3 NP_203534.1 Accepted alive Link to Nucleotide Sequence:NM_033370.3Link to Protein Sequence:NP_203534.1Re-query CCDS DB by Nucleotide ID:NM_033370Re-query CCDS DB by Protein ID:NP_203534Link to BLAST:NP_203534.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_203534.1 953 Q9JIF7 953 100% 0 0

Chromosomal Locations for CCDS 21759.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 114215878 114215937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114216463 114216618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114217622 114217711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114219526 114219671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114221643 114221762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114223203 114223347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114226603 114226782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114226947 114227174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114232175 114232295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114233197 114233357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114234939 114235035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114236787 114236932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114237294 114237440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114237527 114237634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114238350 114238469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114240625 114240762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114245424 114245516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114246728 114246842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114248808 114248977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114250046 114250275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 114253870 114253960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2862 nt):
ATGACGGCAGCCGAGAACGTGTGCTATACGTTAATTAACGTGCCAATGGATTCAGAACCCCCTTCGGAAA
TCAGCTTAAAAAATGACCTGGAGAAAGGCGATGTGAAGTCAAAGACTGAAGCTTTGAAGAAAGTGATCAT
TATGATTCTGAATGGGGAAAAGCTTCCCGGACTCCTGATGACAATCATTCGCTTCGTGCTGCCTCTTCAG
GATCACACCATCAAAAAGTTGCTCCTGGTCTTCTGGGAGATTGTTCCTAAAACAACTCCAGATGGAAGGC
TCTTACATGAAATGATTCTTGTGTGTGATGCATACAGAAAGGATCTCCAGCACCCCAATGAGTTTATTCG
TGGATCTACTCTTCGTTTCCTTTGCAAATTGAAGGAAGCAGAATTGCTGGAACCTTTAATGCCTGCTATC
CGTGCGTGCTTGGAACATCGTCACAGCTATGTTAGGAGAAATGCTGTTTTGGCCATCTATACCATCTACA
GAAATTTTGAACATCTTATACCTGATGCTCCTGAACTGATACATGATTTTCTTGTGAATGAGAAGGATGC
AAGCTGCAAAAGAAATGCATTTATGATGCTAATTCACGCAGATCAGGATCGAGCTTTGGATTATTTAAGT
ACATGTATTGATCAAGTTCAGACATTTGGAGACATTCTACAGTTGGTTATTGTTGAACTAATTTATAAGG
TCTGTCATGCTAATCCATCAGAAAGGGCCCGCTTCATTCGCTGTATCTATAACTTACTGCAGTCATCTAG
TCCTGCTGTAAAATATGAGGCTGCTGGGACACTGGTAACACTGTCAAGTGCACCAACTGCAATAAAGGCT
GCTGCTCAGTGTTACATTGATTTAATTATTAAGGAGAGTGATAACAATGTAAAGCTCATCGTCCTGGACC
GCTTGGTGGAATTAAAAGAGCATCCTGCTCATGAACGAGTCCTGCAGGATCTGGTCATGGACATCCTAAG
AGTACTGAGTACGCCAGACTTAGAAGTGCGTAAGAAAACGCTGCAGTTAGCACTGGATCTTGTCTCATCT
AGGAATGTTGAAGAGTTGGTTATTGTCTTAAAGAAGGAAGTAATTAAAACAAATAATGTGTCTGAGCATG
AAGACACTGACAAATACCGACAGCTTCTCGTGCGAACACTGCATTCCTGCTCTGTCCGATTTCCAGATAT
GGCTGCAAATGTTATTCCTGTGTTAATGGAATTTCTCAGTGACAGTAATGAAGCAGCAGCTGCTGATGTC
TTAGAGTTTGTTCGTGAAGCCATTCAGCGCTTTGACAACCTGAGAATGCTGATTGTTGAGAAGATGCTGG
AAGTCTTCCATGCTATTAAGTCTGTCAAGATTTACCGAGGAGCATTGTGGATCCTGGGAGAGTACTGCAG
TACAAAGGAAGACATTCAGAGTGTGATGACTGAGGTCCGCAGGTCCCTTGGGGAGATACCAATTGTAGAA
TCAGAAATAAAGAAAGAAGCTGGCGAGTTAAAACCAGAAGAAGAAATAACTGTTGGGCCCGTTCAGAAAT
TGGTTACGGAGATGGGCACCTATGCTACTCAGAGTGCGCTCAGCAGTTCCAGACCTACCAAGAAAGAAGA
AGACAGACCACCCTTGAGAGGGTTCCTCCTGGATGGAGATTTCTTTGTTGCTGCTTCCCTCGCCACAACT
CTAACCAAGATTGCATTGCGCTATGTAGCGTTGGTTCAGGAGAAGAAAAAGCAAAATTCTTTTGTTGCTG
AGGCTATGTTGCTTATGGCAACTATCCTTCATTTGGGAAAATCCTCTCTTCCTAAGAAGCCAATTACTGA
TGATGATGTAGATCGAATTTCCCTGTGCCTCAAGGTCTTATCTGAATGCTCACCTTTAATGAATGACATC
TTTAATAAGGAGTGCAGACAGTCTCTTTCCCAAATGTTATCTGCCAAACTCGAAGAAGAGAAACTATCCC
AGAAGAAAGAATCTGAAAAGAGAAATGTGACAGTACAGCCTGATGACCCCATTTCCTTCATGCAACTAAC
TGCGAAGAATGAAATGAACTGCAAGGAAGATCAGTTCCAGCTGAGTTTGTTGGCAGCAATGGGTAATACT
CAGAGGAAAGAGGCAGCTGATCCCCTAGCATCCAAACTTAACAAGGTCACTCAGTTGACAGGCTTCTCGG
ATCCAGTGTATGCAGAAGCCTATGTTCATGTCAATCAGTACGACATCGTCCTGGATGTTCTGGTTGTAAA
CCAAACCAGTGATACTTTGCAGAACTGCACATTAGAGTTAGCCACTCTAGGGGATCTGAAACTTGTGGAA
AAACCATCTCCTTTGACTCTTGCTCCTCATGACTTTGCAAATATTAAAGCTAATGTCAAGGTAGCATCAA
CAGAAAACGGAATAATTTTTGGCAATATAGTTTATGATGTTTCTGGAGCAGCAAGTGACAGAAACTGTGT
GGTCCTCAGTGACATCCACATTGACATCATGGACTATATCCAGCCTGCAACTTGCACTGATGCTGAGTTC
CGTCAGATGTGGGCCGAATTTGAATGGGAAAATAAAGTGACAGTTAACACCAACATGACTGACCTGAATG
ACTACTTACAGCACATCCTCAAGTCGACCAACATGAAGTGCCTGACTCCAGAGAAGGCCCTTTCTGGATA
CTGTGGCTTTATGGCAGCCAATCTTTATGCACGTTCTATATTTGGAGAGGATGCACTTGCAAATGTCAGC
ATTGAGAAGCCAGTTCACCAGGGACCAGATGCTGCCGTTACTGGCCATATAAGAATTCGTGCAAAAAGTC
AGGGAATGGCCTTGAGCCTTGGAGATAAAATCAACCTGTCTCAAAAGAAGACTAGTCTATAA

Translation (953 aa):
MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLMTIIRFVLPLQ
DHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAI
RACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDFLVNEKDASCKRNAFMMLIHADQDRALDYLS
TCIDQVQTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKA
AAQCYIDLIIKESDNNVKLIVLDRLVELKEHPAHERVLQDLVMDILRVLSTPDLEVRKKTLQLALDLVSS
RNVEELVIVLKKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDSNEAAAADV
LEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVE
SEIKKEAGELKPEEEITVGPVQKLVTEMGTYATQSALSSSRPTKKEEDRPPLRGFLLDGDFFVAASLATT
LTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDI
FNKECRQSLSQMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQLTAKNEMNCKEDQFQLSLLAAMGNT
QRKEAADPLASKLNKVTQLTGFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVE
KPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEF
RQMWAEFEWENKVTVNTNMTDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVS
IEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKKTSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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