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Report for CCDS20521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20521.1 Public Mus musculus 6 C1ra 23 108 98 CCDS HistoryNCBI Gene:50909Re-query CCDS DB by CCDS ID:20521.1Re-query CCDS DB by GeneID:50909See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20521.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068593.8 ENSMUSP00000063707.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068593.8Link to Ensembl Protein Viewer:ENSMUSP00000063707.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068593Re-query CCDS DB by Protein ID:ENSMUSP00000063707
Original member Current member NCBI NM_023143.3 NP_075632.3 Accepted alive Link to Nucleotide Sequence:NM_023143.3Link to Protein Sequence:NP_075632.3Re-query CCDS DB by Nucleotide ID:NM_023143Re-query CCDS DB by Protein ID:NP_075632Link to BLAST:NP_075632.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075632.3 707 Q8CG16 707 100% 0 0

Chromosomal Locations for CCDS 20521.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124512799 124512800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124513652 124513877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124515667 124515859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124516712 124516858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124516956 124517152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124517361 124517508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124517693 124517814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124519352 124519430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124519721 124519876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124521620 124521694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124522202 124522980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGTGGCTCTTTGCCCTCCTGGTGACCCTGTTCTATGGGGTGGAAGGCTCCATTTACCTCCCTCAGAAGC
TCTATGGAGAGGTGACCTCCCCTCTGTATCCCAAGCCTTACCCCAGTGACTTGGAGACAACCACTGTGAT
CACTGTCCCCATGGGGTACAGGGTGAAGCTGGTCTTCTGGCAGTTTGACGTGGAGCCTTCTGAAGGCTGC
TTCTATGACTATGTTAAGATTTCTGCTGATAAGCAAACACTGGGGAGGTTCTGTGGGCAGCTGGATTCTC
CCCTGGGCAACCCCCCAGGAAGCAAGGAATTCATGTCCCAAGGAAACAAGATGCTGCTGACCTTCCACAC
AGACTTCTCCAATGAGGAGAATGGGACCATCATGTTCTACAAGGGCTTCCTGGCCTACTACCAGGCTGTA
GACCTTGATGAATGTGCATCGCAGCCCAACTCAGTGGAAGAGGGTTTGCAGCCCCGATGCCAACATCTGT
GTCACAACTATGTTGGAGGCTACTTCTGTTCCTGCCATCCTGGCTATGAGCTTCAGAAAGATGGGCAATC
CTGCCAGGCTGAGTGCAGCAGTGAGCTCTACACAGAGCCCTCAGGCTATGTCTCCAGCCTTGAATACCCT
CAGCCCTATCCACCGGATCTACGCTGCAACTACAGCATCCGGGTGGAGAGGGGCCTCACTGTGCACCTCA
AGTTCCTGGATCCTTTTGAAATTGATGACCACCAGCAAGTGCACTGCCCCTATGACCAGCTCCAGATCTA
CGCTAATGGGAAGAACTTGGGTGAATTCTGTGGAAAGCAAAGGCCTCCAGACCTTGACACCAGCAGCAAT
GCAGTGGATCTGCTGTTCTTCACAGATGAGTCAGGGGACAGCCGAGGCTGGAAGCTGCACTACACCACTG
AAACCATCAAGTGCCCCCAGCCCAAGGCTCTGGATGAGTTCACCATCATCCAGGATCCGCAGCCTCAGTA
CCAGTTCCGGGATTACTTCATTGTCACCTGCAAGCAAGGCTACCAGCTCATGGAGGGAAATCAGGCGCTA
CTCTCCTTCACAGCTGTTTGCCAGAATGATGGCACATGGCATCGTGCCATGCCCAGGTGCAAGATCAAGA
ACTGTGGGCAGCCCCAAAGCCTGTCTAATGGGGACTTCCGCTACATCACCACAAAAGGCGTGACCACCTA
TGAAGCCAGTATCCAGTATCACTGCCATGAACCATATTACAAGATGCTGACCAGAGCTGGCAGCAGCGAG
TCCATGCGAGGGATATATACCTGCACAGCCCAAGGCATTTGGAAGAATGAAGAGGAAGGAGAGAAAATGC
CCCGGTGTCTGCCAGTGTGTGGGAAACCTGTCAACCCTGTGACACAGAAGGAGCGCATCATCAGAGGGCA
GCCAGCCAGGCCCGGCAACTTCCCCTGGCAGGCCTTCACCACTACCCACGGGCGAGGGGGTGGGGCCCTG
CTTGGAGACCGCTGGATCCTCACAGCAGCCCACACCATCTACCCCAAGCATCACAACAAGGAAAACGACA
ATGCCAACCCCAAAATGCTTGTTTTCCTGGGCCACACAAATGTGGAACAGATCAAAAAACTGGGACATCA
CCCAGTCCGTAGGGTCATCATACACCCAGACTACCGCCAAGATGAACCTAACAATTTTGAAGGAGACATT
GCTCTACTGGAGCTGGAAAACAGTGTCACACTGGGCCCCGAACTCCTCCCCATCTGTCTCCCAGACAATG
AGACCTTCTATGGCCAAGGCCTCATGGGTTATGTCAGCGGATTCGGGATAACAGAAGATAAGTTAGCTTT
CGATCTCAGGTTCGTCAGACTGCCTGTAGCTGACAGTGAGGCATGCCAGAGATGGCTCCAGACAAAAAAG
GATACTTCTCCATTTTCTCAAAATATGTTCTGTTCTGGGGACCCAGCTGTACAGCAAGACGCCTGCCAAG
GGGACAGTGGGGGTGTTTTTGCAGTCAGGGACAGAAATCGTGATATTTGGGTGGCTACGGGCATCGTATC
CTGGGGCATTGGGTGTGGTGAGGGATATGGCTTCTACACCAAGGTACTGAATTATGTTGACTGGATCAAG
AAAGAGATGGGAGACGAAAACTGA

Translation (707 aa):
MWLFALLVTLFYGVEGSIYLPQKLYGEVTSPLYPKPYPSDLETTTVITVPMGYRVKLVFWQFDVEPSEGC
FYDYVKISADKQTLGRFCGQLDSPLGNPPGSKEFMSQGNKMLLTFHTDFSNEENGTIMFYKGFLAYYQAV
DLDECASQPNSVEEGLQPRCQHLCHNYVGGYFCSCHPGYELQKDGQSCQAECSSELYTEPSGYVSSLEYP
QPYPPDLRCNYSIRVERGLTVHLKFLDPFEIDDHQQVHCPYDQLQIYANGKNLGEFCGKQRPPDLDTSSN
AVDLLFFTDESGDSRGWKLHYTTETIKCPQPKALDEFTIIQDPQPQYQFRDYFIVTCKQGYQLMEGNQAL
LSFTAVCQNDGTWHRAMPRCKIKNCGQPQSLSNGDFRYITTKGVTTYEASIQYHCHEPYYKMLTRAGSSE
SMRGIYTCTAQGIWKNEEEGEKMPRCLPVCGKPVNPVTQKERIIRGQPARPGNFPWQAFTTTHGRGGGAL
LGDRWILTAAHTIYPKHHNKENDNANPKMLVFLGHTNVEQIKKLGHHPVRRVIIHPDYRQDEPNNFEGDI
ALLELENSVTLGPELLPICLPDNETFYGQGLMGYVSGFGITEDKLAFDLRFVRLPVADSEACQRWLQTKK
DTSPFSQNMFCSGDPAVQQDACQGDSGGVFAVRDRNRDIWVATGIVSWGIGCGEGYGFYTKVLNYVDWIK
KEMGDEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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