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Report for CCDS20394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20394.1 Public Mus musculus 6 Cntn6 23 108 98 CCDS HistoryNCBI Gene:53870Re-query CCDS DB by CCDS ID:20394.1Re-query CCDS DB by GeneID:53870See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20394.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089215.11 ENSMUSP00000086623.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089215.11Link to Ensembl Protein Viewer:ENSMUSP00000086623.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000089215Re-query CCDS DB by Protein ID:ENSMUSP00000086623
Original member Current member EBI ENSMUST00000162872.1 ENSMUSP00000124025.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162872.1Link to Ensembl Protein Viewer:ENSMUSP00000124025.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162872Re-query CCDS DB by Protein ID:ENSMUSP00000124025
Original member NCBI NM_017383.3 NP_059079.2 Updated not alive Link to Nucleotide Sequence:NM_017383.3Link to Protein Sequence:NP_059079.2Re-query CCDS DB by Nucleotide ID:NM_017383Re-query CCDS DB by Protein ID:NP_059079
Current member NCBI NM_017383.4 NP_059079.2 Accepted alive Link to Nucleotide Sequence:NM_017383.4Link to Protein Sequence:NP_059079.2Re-query CCDS DB by Nucleotide ID:NM_017383Re-query CCDS DB by Protein ID:NP_059079Link to BLAST:NP_059079.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059079.2 1028 Q9JMB8-1 1028 100% 0 0

Chromosomal Locations for CCDS 20394.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 104569039 104569093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104642897 104643023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104650390 104650565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104701162 104701257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104726073 104726276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104728266 104728368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104767709 104767893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104772552 104772688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104774468 104774597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104776302 104776452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104804319 104804446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104832498 104832673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104833027 104833144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104833783 104833941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104835704 104835853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104838755 104838825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104845656 104845890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104846025 104846140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104848018 104848204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104859379 104859491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104861804 104861972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 104863127 104863227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3087 nt):
ATGAGGTTGCTATGGAAACTGGTAATTCTGCTGCCACTCATAAACTCTTGTGCAGGTGAGGGTCGTTTCA
GCCGTCCTATTTTTATCCAGGAGCCACAAGATGTCATTTTTCCTTTGGATTTATCTAGATCTGAAATTAT
TCTGACTTGTACTGCAAATGGATACCCTTCTCCCCATTACAGGTGGAAACAGAATGGTACAGATATTGAC
TTCGGCATGACTTATCACTATAGGTTGGATGGAGGCAGTTTGGCCATCAGCAGCCCCAGAACAGATCAAG
ATATTGGCATATACCAGTGTCTGGCCACCAATCCTGTGGGCACCATTCTGAGTAGAAAAGCCAAGCTACA
GTTTGCATATATTGAAGACTTTGAAACCAAAACCAGAAGCACAGTATCTGTCCGAGAAGGTCAAGGAGTG
GTACTACTCTGTGGCCCACCACCACATTTTGGAGAATTATCATATGCCTGGACCTTCAATGATAGCCCTT
TGTATGTTCAAGAGGACAAGCGAAGATTTGTATCTCAAGACACAGGGAACTTGTACTTTGCCAAAGTAGA
ACCATCTGATGTGGGCAATTATACTTGCTTTGTCACAAACAAAGAGGCCCATAGAAGTGTCCAAGGTCCA
CCTACGCCTTTAGTGCTGCGCACTGATGGTGTCATGGGGGAATATGAGCCAAAGATTGAAGTGCGTTTTC
CTGAAACAATACAAGCTGCAAAGGATTCATCTATAAAACTGGAATGCTTTGCCCTTGGAAATCCAGTCCC
TGATATTAGTTGGAAAAGGTTGGATGGAAGCCCGATGCCAGGGAAAATCAAGTACAGCAAATCCCAAGCT
ATCCTTGAAATCCCCAAGTTCCAACAAGAGGATGAAGGCTTCTATGAATGCATCGCAGGTAACCTTCGAG
GAAGAAACCTTGCAAAGGGTCAACTAATTTTCTATGCTCCCCCAGAATGGGAACAGAAAATCCAAAACAC
ATACCTTTCTATCTATGACAGCTTGTTTTGGGAATGCAAAGCTAGTGGAAATCCAAATCCTTCGTACACG
TGGCTAAAGAATGGTCAACGTCTCAACACAGAAGAAAGAATTCAGATTGAAAATGGGACTCTTATCATCA
CCATGCTGAACATTTCAGACTCTGGGATCTACCAGTGTGCTGCAGAAAACAAATATCAGACAATTTATGC
AAATGCAGAATTGAGAGTTTTAGCCTCAGCTCCAGATTTCTCCAAAAATCCCATTAAAAAAATTTCAGTT
GTTCAAGTTGGTGGTGATATTTCTATTGAATGCAAACCAAATGCTTTCCCCAAAGCATCGATTTCCTGGA
AAAGAGGAACAGAGAACCTGAAACAAAGTAAAAGAGTTCTTTTCTTGGAGGATGGCAGCCTTAAGATATG
CAATGTTACCAGAGCAGATGCTGGGTCTTACACCTGTGTAGCTACAAATCAATTTGGCAATGGGAAAAGC
AGTGGAGGTCTCGTCGTGAAAGAGAGAACGATCATTACAGTACCACCATCTAAAATGGATGTTACAGTTG
GAGAGAGCATCGTCTTACCCTGCCAAGTGTCTCATGACCCCACCATGGAAGTTCTATTTGTTTGGTACTT
TAATGGAGATATTATAGATTTAAAGAAAGGAGTAGCCCATTTTGAACGAATTGGGGGAGAATCTGTTGGG
GATTTGATGATAAGGAATATTCAATTAGGCCATTCGGGAAAATATCTATGCACAGTACAAACAACACTAG
AACGCTTGTCTGCTGTAGCTGATATCATTGTGAGAGGTCCCCCAGGGCCCCCAGAGGATGTAAAAGTGGA
GCACATCTCTAGTACGACCTCCCAGCTCAGCTGGAGACCAGGTCCTGATAATAACAGCCCCATTCAAATT
TTTACTATTCAAACTCGGACACCCTTTTCTGTGGGCTGGCAAGCGGTTGCTACAGTCCCTGAAATTCTCA
ATGGACAGACATACAATGCAACAGTCGTTGGTTTGAGTCCTTGGGTGGAATACGAATTTCGTGTTGTTGC
TGGGAACAACATTGGAATTGGAGAGCCAAGCAAACCATCAGAGCTGCTGAGAACCAAAGCATCAGTCCCC
AATGTGGCACCAGGAAATATCAATGGAGGCGGTGGAAGCAGATCGGAACTTGTCATTACGTGGGAGGCCA
TTCCTGAAGAACTACAGAATGGAGAGGGGTTTGGATATATCGTCATGTTTCGGCCAGTAGGCACAACCGC
CTGGATGAAAGAAAGGGTGGCTCTTGTAGAATCATCCAAGTTCATCTATAGAAATGAAAGCATCATGCCT
CTGTCTCCCTTTGAAGTCAAAGTGGGAGTGTACAATAATGAAGGAGAGGGATCCCTGAGTACTGTGACCA
TTGTCTACTCTGGGGAAGATGAGCCTCAGCTGGCCCCAAGAGGAACTTCTGTCCAGAGTTTTTCTGCTTC
TGAAATGGAGGTTTCCTGGAATGCTATTGCTTGGAATAGAAACACTGGAAGAGTGCTAGGCTATGAGGTC
TTATACTGGACAGACAACTCCAAAGAATCTATGATTGGTAAAATTAGAGTCAGTGGAAATGTCACAACCA
AGAACATCACAGGACTAAGAGCTAATACGATTTACTTTGCCTCTGTGAGAGCCTATAACACTGCAGGGAC
TGGACCCTCAAGTCTGCCAGTTAATGTCACCACCAAAAAGTCCCCTCCTAGCCAACCACCAGCAAACATT
GCCTGGAAGCTGTCAAATTCTAAATTATGCTTGAACTGGGAGCATGTAAAAACCATGGAAAATGAGTCTG
AAGTGCTGGGCTACAAGATCCTCTATCGGCAGAACCGACAGAGTAAAACTCATATTTTGGAAACAAATAA
TACATCTGCTGAACTCCTGGTTCCATTTGAAGAAGACTATTTGATTGAAATCAGAACAGTCAGTGATGGT
GGAGATGGAAGCAGCAGTGAGGAAATCAGAATTCCAAAAATGTCAAGTTTGAGTTCCACAGGAGTTCAGA
TCTCGAAGCCCAGCACCCAGTCCCTGTCAATGGTTGGGGTTTTTTACTGTTTTGCTATTCACCCACTTTC
GAGATGA

Translation (1028 aa):
MRLLWKLVILLPLINSCAGEGRFSRPIFIQEPQDVIFPLDLSRSEIILTCTANGYPSPHYRWKQNGTDID
FGMTYHYRLDGGSLAISSPRTDQDIGIYQCLATNPVGTILSRKAKLQFAYIEDFETKTRSTVSVREGQGV
VLLCGPPPHFGELSYAWTFNDSPLYVQEDKRRFVSQDTGNLYFAKVEPSDVGNYTCFVTNKEAHRSVQGP
PTPLVLRTDGVMGEYEPKIEVRFPETIQAAKDSSIKLECFALGNPVPDISWKRLDGSPMPGKIKYSKSQA
ILEIPKFQQEDEGFYECIAGNLRGRNLAKGQLIFYAPPEWEQKIQNTYLSIYDSLFWECKASGNPNPSYT
WLKNGQRLNTEERIQIENGTLIITMLNISDSGIYQCAAENKYQTIYANAELRVLASAPDFSKNPIKKISV
VQVGGDISIECKPNAFPKASISWKRGTENLKQSKRVLFLEDGSLKICNVTRADAGSYTCVATNQFGNGKS
SGGLVVKERTIITVPPSKMDVTVGESIVLPCQVSHDPTMEVLFVWYFNGDIIDLKKGVAHFERIGGESVG
DLMIRNIQLGHSGKYLCTVQTTLERLSAVADIIVRGPPGPPEDVKVEHISSTTSQLSWRPGPDNNSPIQI
FTIQTRTPFSVGWQAVATVPEILNGQTYNATVVGLSPWVEYEFRVVAGNNIGIGEPSKPSELLRTKASVP
NVAPGNINGGGGSRSELVITWEAIPEELQNGEGFGYIVMFRPVGTTAWMKERVALVESSKFIYRNESIMP
LSPFEVKVGVYNNEGEGSLSTVTIVYSGEDEPQLAPRGTSVQSFSASEMEVSWNAIAWNRNTGRVLGYEV
LYWTDNSKESMIGKIRVSGNVTTKNITGLRANTIYFASVRAYNTAGTGPSSLPVNVTTKKSPPSQPPANI
AWKLSNSKLCLNWEHVKTMENESEVLGYKILYRQNRQSKTHILETNNTSAELLVPFEEDYLIEIRTVSDG
GDGSSSEEIRIPKMSSLSSTGVQISKPSTQSLSMVGVFYCFAIHPLSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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