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Report for CCDS20340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20340.1 Public Mus musculus 6 Podxl2 23 108 98 CCDS HistoryNCBI Gene:319655Re-query CCDS DB by CCDS ID:20340.1Re-query CCDS DB by GeneID:319655See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20340.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038409.11 ENSMUSP00000040417.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038409.11Link to Ensembl Protein Viewer:ENSMUSP00000040417.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038409Re-query CCDS DB by Protein ID:ENSMUSP00000040417
Original member Current member EBI ENSMUST00000061262.10 ENSMUSP00000058985.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061262.10Link to Ensembl Protein Viewer:ENSMUSP00000058985.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000061262Re-query CCDS DB by Protein ID:ENSMUSP00000058985
Original member NCBI NM_001364575.1 NP_001351504.1 Updated not alive Link to Nucleotide Sequence:NM_001364575.1Link to Protein Sequence:NP_001351504.1Re-query CCDS DB by Nucleotide ID:NM_001364575Re-query CCDS DB by Protein ID:NP_001351504
Current member NCBI NM_001364575.2 NP_001351504.1 Accepted alive Link to Nucleotide Sequence:NM_001364575.2Link to Protein Sequence:NP_001351504.1Re-query CCDS DB by Nucleotide ID:NM_001364575Re-query CCDS DB by Protein ID:NP_001351504Link to BLAST:NP_001351504.1
Original member NCBI NM_176973.4 NP_795947.3 Updated not alive Link to Nucleotide Sequence:NM_176973.4Link to Protein Sequence:NP_795947.3Re-query CCDS DB by Nucleotide ID:NM_176973Re-query CCDS DB by Protein ID:NP_795947
Current member NCBI NM_176973.5 NP_795947.3 Accepted alive Link to Nucleotide Sequence:NM_176973.5Link to Protein Sequence:NP_795947.3Re-query CCDS DB by Nucleotide ID:NM_176973Re-query CCDS DB by Protein ID:NP_795947Link to BLAST:NP_795947.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351504.1 539 Q8CAE9-3 539 99.8145% 0 1
NP_795947.3 539 Q8CAE9-3 539 99.8145% 0 1

Chromosomal Locations for CCDS 20340.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 88842767 88842976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88843507 88843686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88845066 88845127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88845533 88845689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88848735 88848809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88849195 88849988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88865017 88865158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGGTCTAGACGCCGGCCTAGCCCCAGGCTCGGGCTTCCCCAGTGAGGACAGCGAGGAGTCCCGGCTCC
TGCAGCCGCCACAGTACTTCTGGGAAGAAGAGGAACTAAACGGCTCCAGCCTGGACCTGGGTCCCACTGC
AGACTACGTCTTCCCAGACCTGACTGAGAAGGTGGCGTCCATGGAAGACCCAGGCCAGGCTCCGGACCTG
CCAAACCTCCCCTCCATCCTGCCCAAGATGGATCTTGCTGAGCCTCCCTGGCATATGCCTCTGCAGGAGG
AGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAAAGGGAAGAAGAGGAGAGGGAGAAGGAAGCAGAGGAGGA
GGAGGAAGAGGAAGAGCTGCTCCCTGTGAGCGGGTCCCCAGGAGCCACCGCACAGGCCCATGCCCCTTCA
CCTAGCACCAGCAGCAGCACCAGCAGCCAGAGTCCTGGGGCCACCCGGCACAGGCAGGAGGATTCTGGAG
ACCAGGCCACATCAGGCATGGAAGTGGAGAGCAGTGTGAAACCCACCTTGTCAGTGCCCTCAGTCACCCC
AAGTACAGTGGCCCCGGGGGTTCAGAACTATAGCCAGGAGTCTGGGGGCACTGAGTGGCCAACTGGGGGG
CTGGGGGTCCAGTCTGAGGTTCCCCAGGGAGCTGGTGAGGGGGCCACAGTGGGAGCAGCTGACTTCGATG
GCCAGCAGGGGGCACTGCCGTCCTCTTCACTCCCACAAACAGTGCCTCCAAGTGGGACTGAGGTCCCCAG
TGAGGGTCCCCTTTACCCCAGAATCCCAGACTCTCTCCCACCTGGACCCCAAGACACAGAGTCAACCCCT
TCCTCTGCTACCTGGGGACAAGAAGGTCTCAGTGAGCAGCCCCTGGAGGGTCAGGCAGCTGAAGCTCACT
CACTAACACCGTGGGACTCTACTCAGGTGATCTGCAAGGATTGGAGCAACCTGGCCGGGAAGAGCTACAT
CATCCTGAACATGACAGAGAACATAGACTGTGAAGTATTTCGGCGGCACCGGGGACTACGGCTCCTAGCT
CTGGTGGAGGAGGTACTGCCACGCCACCGCAGTGGCCATCGTGGAGACTGGCATATTTCTCTGAGCAAGC
CCAGTGAGAAAGAGCAACACCTGCTGATGACCCTTGTAGGAGAACAGGGCGTGGTACCCACTCAAGATGT
CCTTTCCATGCTCAGTGGCATCCGCAGGAGTCTGGAGGAGATTGGCATCCAGAACTACTCCACCACCAGC
AGCTGCCAGGCACGAGCCACCCAGGTGCGCAGTGACTACGGGACGCTCTTTGTAGTGCTGGTGATCATTG
GTGTCATCTGCTTCATCATCATTGTGCTTGGCCTACTCTACAATTGTTGGCAGCGCCGGATGCCCAAGCT
CAAACACGTGTCGCACGGTGAGGAGCTGCGCTTCGTGGAGAACGGCTGCCACGACAATCCCACGCTGGAC
GTGGCCAGCGACAGCCAGTCGGAGATGCAGGAGAAGCAGCCCAGCCTGAACGGTGGGGCCATCAACGGCC
CGAGCAGCTGGAGCGCGCTCATGGGCAGCAAACGCGACCCTGAGGACTCGGACGTGTTCGAGGAGGACAC
TCACCTGTGA

Translation (539 aa):
MGLDAGLAPGSGFPSEDSEESRLLQPPQYFWEEEELNGSSLDLGPTADYVFPDLTEKVASMEDPGQAPDL
PNLPSILPKMDLAEPPWHMPLQEEEEEEEEEEEEREEEEREKEAEEEEEEEELLPVSGSPGATAQAHAPS
PSTSSSTSSQSPGATRHRQEDSGDQATSGMEVESSVKPTLSVPSVTPSTVAPGVQNYSQESGGTEWPTGG
LGVQSEVPQGAGEGATVGAADFDGQQGALPSSSLPQTVPPSGTEVPSEGPLYPRIPDSLPPGPQDTESTP
SSATWGQEGLSEQPLEGQAAEAHSLTPWDSTQVICKDWSNLAGKSYIILNMTENIDCEVFRRHRGLRLLA
LVEEVLPRHRSGHRGDWHISLSKPSEKEQHLLMTLVGEQGVVPTQDVLSMLSGIRRSLEEIGIQNYSTTS
SCQARATQVRSDYGTLFVVLVIIGVICFIIIVLGLLYNCWQRRMPKLKHVSHGEELRFVENGCHDNPTLD
VASDSQSEMQEKQPSLNGGAINGPSSWSALMGSKRDPEDSDVFEEDTHL


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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