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Report for CCDS19793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19793.1 Public Mus musculus 5 Mcm7 23 108 98 CCDS HistoryNCBI Gene:17220Re-query CCDS DB by CCDS ID:19793.1Re-query CCDS DB by GeneID:17220See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19793.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000505.15 ENSMUSP00000000505.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000505.15Link to Ensembl Protein Viewer:ENSMUSP00000000505.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000000505Re-query CCDS DB by Protein ID:ENSMUSP00000000505
Original member Current member NCBI NM_008568.3 NP_032594.1 Accepted alive Link to Nucleotide Sequence:NM_008568.3Link to Protein Sequence:NP_032594.1Re-query CCDS DB by Nucleotide ID:NM_008568Re-query CCDS DB by Protein ID:NP_032594Link to BLAST:NP_032594.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032594.1 719 Q61881 719 100% 0 0

Chromosomal Locations for CCDS 19793.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138164719 138164920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138165052 138165161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138165910 138166078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138166683 138166766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138167046 138167439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138167551 138167634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138167841 138167972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138168058 138168172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138168333 138168482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138168810 138168947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138169098 138169278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138169349 138169473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138169560 138169724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138170317 138170396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138171726 138171756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2160 nt):
ATGGCGCTTAAGGACTACGCGATCGAAAAAGAAAAAGTTAAGAAGTTCCTCCAAGAGTTTTATTACGAGA
AT
GAGCTTGGAAAGAAGCAGTTCAAGTATGGGACCCAGTTGGTTCATCTGGCTCATCGGGAACAAGTGGC
A
CTGTATGTGGACCTGGATGACATAGCTGAAGATGACCCTGAGTTGGTCGACTCAATTTGCGAGAATGCC
AAG
CGCTACTCAAGACTGTTTGGTGATGTTGTGCAAGAGCTTTTGCCTGAGTACAAGGAGAAGGAGGTGG
TG
AATAAGGATGTCTTAGATGTTTACATTGAACACCGGCTGATGATGGAGCAGCGAAGCAGAGACCCTGG
G
GCAGTCCGGAACCCCCAAAACCAGTATCCTTCTGAACTCATGCGAAGATTTGAGTTGTATTTCCGAGGC
CCA
AGTAGCAGCAAGCCTCGAGTGATCCGGGAAGTACGAGCTGACTCTGTGGGGAAATTGTTAACTGTGC
GT
GGCATTGTCACTCGTGTGTCTGAAGTCAAGCCCAGGATGGTGGTGGCCACATACACTTGTGATCAGTG
T
GGGGCAGAGACCTACCAGCCAATCCAGTCTCCCACTTTCATGCCTCTGATCATGTGCCCCAGCCAGGAG
TGC
CAGACCAATCGCTCAGGGGGGCGGCTGTACCTACAGACTCGTGGCTCCAAATTTGTTAAATTCCAGG
AA
ATGAAGATTCAAGAGCATAGTGACCAAGTTCCTGTGGGAAACATCCCTCGTAGCATCACAGTGGTTCT
A
GAAGGTGAGAACACAAGAATTGCCCAGCCTGGTGACCATGTCAGCGTCACTGGCATCTTCTTGCCAGTC
CTG
CGCACAGGGTTCCAACAGATGGCACAGGGCTTACTCTCAGAAACTTACCTGGAAGCCCACTGGATTG
TG
AAGATGACAAAGAGTGACGATGATGTCTCTGGGGCCGGAGAGCTGAGCTCAGAGGAGCTGAAGCAGAT
T
GCAGAGGAGGATTTCTATGAGAAGCTGGCCGCTTCTATTGCTCCGGAGATCTATGGACATGAAGATGTG
AAG
AAGGCGCTGCTGCTGCTTCTGGTGGGTGGTGTGGACCAGTCTCCTCAAGGCATGAAGATCAGAGGAA
AC
ATCCACATCTGCCTTATGGGAGACCCTGGTGTGGCCAAATCTCAGCTCCTATCTTACATCGACCGTCT
G
GCACCGCGAAGTCAGTACACAACAGGCCGTGGCTCCTCTGGTGTAGGGCTCACAGCAGCTGTGTTGAGA
GAC
TCTGTGAGTGGAGAACTGACTTTAGAGGGCGGTGCCCTGGTGCTGGCTGACCAGGGCGTGTGCTGCA
TT
GATGAGTTTGACAAGATGGCCGAGGCTGACCGCACAGCCATCCATGAGGTTATGGAGCAGCAGACCAT
C
TCCATCGCCAAGGCGGGGATTCTCACCACGCTCAATGCCCGATGCTCCATCCTGGCTGCGGCCAATCCT
GCC
TACGGCCGATATAATCCCCGCCGCAGTCTGGAGCAGAACGTCCAGCTTCCGGCTGCTCTGCTTTCTC
GA
TTCGACCTCCTCTGGCTGATTCAAGACCGGCCCGACAGAGACAATGACCTCCGGTTGGCCCAGCACAT
C
ACCTATGTCCACCAGCACAGCCGGCAGCCCCCTGCCCAATTTGAACCTTTGGACATGAAACTTATGAGA
CGG
TACATAGCCATGTGCCACGAGAGACAGCCCACAGTGCCTGAATCTCTGGCTGACTACATCACCGCAG
CA
TATGTGGAGATGAGGCGAGAGGCCCGGGCCAGTAAGGATGCCACCTATACTTCTGCCCGGACCCTGCT
G
GCCATTCTCCGACTTTCCACTGCTCTGGCTCGACTTCGGATGGTAGACATTGTGGAGAAGGAAGATGTA
AAT
GAAGCCATAAGGTTGATGGAGATGTCGAAGGACTCCCTTCTAGGTGAAAAGGGACAGACAGCTAGGA
CC
CAGAGGCCAGCAGATGTGATATTTGCCACCATCCGTGAATTGGTGTCACGGGGGCGGAGTGTCCACTT
T
TCTGAGGCTGAACAGCGCTGCATATCTCGTGGCTTCACACCAGCCCAGTTCCAGGCAGCTCTGGATGAA
TAT
GAGGAGCTAAATGTCTGGCAGGTTAATACTTCTCGGACACGGATCACCTTTGTCTGA


Translation (719 aa):
MALKDYAIEKEKVKKFLQEFYYENELGKKQFKYGTQLVHLAHREQVALYVDLDDIAEDDPELVDSICENA
K
RYSRLFGDVVQELLPEYKEKE
VVNKDVLDVYIEHRLMMEQRSRDPGAVRNPQNQYPSELMRRFELYFRG
P
SSSKPRVIREVRADSVGKLLTVRGIVTRVSEVKPRMVVATYTCDQCGAETYQP
IQSPTFMPLIMCPSQE
C
QTNRSGGRLYLQTRGSKFVKFQEMKIQEH
SDQVPVGNIPRSITVVLEGENTRIAQPGDHVSVTGIFLPV
L
RTGFQQMAQ
GLLSETYLEAHWIVKMTKSDDDVSGAGELSSEELKQIAEEDFYEKLAASIAPEIYGHEDV
K
KALLLLLVGGVDQSPQGMKIR
GNIHICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVLR
D
SVSGELTLEGGALVLADQGVCCIDEFDKMAEADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANP
A
YGRYNPRRSLEQNVQLPAALLSRFDLLWLIQDRPDRDNDL
RLAQHITYVHQHSRQPPAQFEPLDMKLMR
R
YIAMCHERQPTVPESLADYITAAYVEMRREARASKDATYTSARTLLAILRLSTAL
ARLRMVDIVEKEDV
N
EAIRLMEMSKDSLLGEKGQTA
RTQRPADVIFATIRELVSRGRSVHFSEAEQRCISRGFTPAQFQAALDE
Y
EELNVWQVNTSRTRITFV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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