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Report for CCDS18696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18696.1 Public Mus musculus 4 Hdac1 23 108 98 CCDS HistoryNCBI Gene:433759Re-query CCDS DB by CCDS ID:18696.1Re-query CCDS DB by GeneID:433759See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102597.4 ENSMUSP00000099657.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102597.4Link to Ensembl Protein Viewer:ENSMUSP00000099657.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102597Re-query CCDS DB by Protein ID:ENSMUSP00000099657
Original member NCBI NM_008228.2 NP_032254.1 Updated not alive Link to Nucleotide Sequence:NM_008228.2Link to Protein Sequence:NP_032254.1Re-query CCDS DB by Nucleotide ID:NM_008228Re-query CCDS DB by Protein ID:NP_032254
Current member NCBI NM_008228.3 NP_032254.1 Accepted alive Link to Nucleotide Sequence:NM_008228.3Link to Protein Sequence:NP_032254.1Re-query CCDS DB by Nucleotide ID:NM_008228Re-query CCDS DB by Protein ID:NP_032254Link to BLAST:NP_032254.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032254.1 482 O09106 482 100% 0 0

Chromosomal Locations for CCDS 18696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129516609 129516636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129516900 129516948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129517356 129517508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129517793 129517923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129518013 129518121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129518831 129518971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129519052 129519160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129521418 129521510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129522363 129522504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129522963 129523101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129524246 129524320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129528927 129529044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129534614 129534726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129542581 129542629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGGCGCAGACTCAGGGCACCAAGAGGAAAGTCTGTTACTACTACGACGGGGATGTTGGAAACTACTATT
ATGGACAAGGGCACCCCATGAAGCCTCACCGAATCCGCATGACTCACAATTTGCTGCTCAACTATGGTCT
CTACCGAAAAATGGAGATCTACCGTCCTCACAAAGCCAATGCTGAGGAGATGACCAAGTACCACAGTGAT
GACTACATTAAATTCCTGCGTTCTATTCGCCCAGATAATATGTCTGAATACAGCAAGCAGATGCAGAGAT
TCAATGTTGGTGAGGACTGTCCGGTGTTTGATGGCTTGTTTGAGTTCTGTCAGTTGTCCACGGGAGGCTC
TGTCGCAAGTGCTGTGAAGCTTAATAAGCAGCAGACGGACATCGCTGTGAACTGGGCCGGGGGCCTGCAC
CATGCAAAGAAGTCTGAAGCTTCTGGCTTCTGTTACGTCAATGACATCGTCCTGGCCATCCTGGAACTGC
TAAAGTACCACCAGAGGGTGCTCTATATTGACATTGATATTCACCATGGCGATGGCGTGGAAGAGGCCTT
CTATACTACAGACCGGGTCATGACTGTGTCCTTTCATAAATACGGAGAGTACTTCCCAGGAACTGGGGAC
CTACGGGACATTGGGGCTGGCAAAGGCAAGTACTATGCTGTGAACTACCCACTGCGAGACGGCATTGACG
ACGAATCCTATGAAGCCATCTTTAAGCCAGTCATGTCCAAAGTAATGGAGATGTTCCAGCCTAGTGCAGT
GGTCTTACAGTGTGGCTCAGATTCCCTGTCTGGGGACCGGTTAGGTTGCTTCAATCTGACCATCAAAGGA
CACGCCAAGTGTGTGGAGTTCGTGAAGAGTTTCAACTTGCCCATGCTGATGCTGGGAGGAGGTGGCTACA
CCATCCGGAATGTTGCTCGCTGCTGGACTTACGAAACAGCGGTGGCCCTGGACACAGAGATCCCTAATGA
GCTGCCCTACAACGACTACTTTGAATACTTTGGACCGGATTTCAAGCTTCACATCAGCCCTTCCAACATG
ACCAACCAGAACACTAACGAGTACCTGGAGAAGATCAAGCAGCGTCTCTTTGAGAACTTGAGGATGCTGC
CCCATGCCCCTGGGGTCCAGATGCAGGCCATCCCTGAGGATGCCATCCCCGAAGAGAGTGGGGATGAAGA
TGAGGAGGACCCTGACAAACGCATCTCCATCTGCTCCTCTGACAAACGCATTGCCTGTGAGGAAGAGTTC
TCGGACTCAGATGAGGAGGGAGAAGGTGGTCGCAAGAACTCTTCTAACTTCAAAAAAGCCAAAAGAGTTA
AAACAGAGGATGAGAAAGAGAAAGATCCTGAAGAGAAAAAAGAAGTCACAGAAGAAGAGAAAACCAAGGA
GGAGAAGCCAGAAGCCAAAGGGGTCAAAGAAGAGGTCAAGTTGGCCTGA

Translation (482 aa):
MAQTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSD
DYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDIAVNWAGGLH
HAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGD
LRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKG
HAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNM
TNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDAIPEESGDEDEEDPDKRISICSSDKRIACEEEF
SDSDEEGEGGRKNSSNFKKAKRVKTEDEKEKDPEEKKEVTEEEKTKEEKPEAKGVKEEVKLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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