NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18507.1 Public Mus musculus 4 Pomgnt1 23 108 98 CCDS HistoryNCBI Gene:68273Re-query CCDS DB by CCDS ID:18507.1Re-query CCDS DB by GeneID:68273See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18507.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106496.7 ENSMUSP00000102105.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106496.7Link to Ensembl Protein Viewer:ENSMUSP00000102105.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106496Re-query CCDS DB by Protein ID:ENSMUSP00000102105
Original member Current member NCBI NM_029786.2 NP_084062.2 Accepted alive Link to Nucleotide Sequence:NM_029786.2Link to Protein Sequence:NP_084062.2Re-query CCDS DB by Nucleotide ID:NM_029786Re-query CCDS DB by Protein ID:NP_084062Link to BLAST:NP_084062.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084062.2 627 Q91X88-3 627 100% 0 0

Chromosomal Locations for CCDS 18507.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116151124 116151243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116151820 116151934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116152077 116152195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116152709 116152774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116152863 116152976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116153551 116153668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116154092 116154219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116154542 116154612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116154831 116154906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116155063 116155146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116155229 116155270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116155460 116155518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116155729 116155801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116155886 116156014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116156096 116156221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116157893 116157957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116158152 116158196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116158423 116158558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116158983 116159092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116159180 116159267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGGATGACTGGAAGCCCAGTCCCCTCATCAAGCCCTTTGGGGCTAGGAAGAAACGGAGCTGGTACCTTA
CCTGGAAGTATAAACTGACAAACCAGCGGGCCCTGAGGAGATTCTGTCAGACAGGGGCTGTGCTTTTCCT
GCTGGTGACCGTCATTGTCAACATCAAGTTGATCCTGGACACTCGGAGAGCAATCAGCGAGGCCAATGAA
GACCCAGAACCAGAGCAAGACTATGATGAGGCCCTAGGACGTCTGGAGTCCCCTCGGCGCAGAGGCAGCA
GTCCCCGACGGGTGCTGGATGTGGAAGTATACTCCAGTAGAAGCAAAGTGTATGTGGCTGTGGATGGCAC
CACGGTGCTCGAGGATGAAGCCCGGGAGCAGGGCCGAGGCATCCATGTCATAGTCCTCAACCAGGCCACG
GGCCACGTGATGGCAAAGCGCGTGTTTGACACATACTCTCCTCATGAGGATGAGGCCATGGTGCTGTTCC
TCAACATGGTGGCCCCCGGCCGCGTGCTGATCTGCACGGTGAAGGATGAGGGTTCCTTCCACCTCAAGGA
CACAGCAAAGGCTCTGCTGAGGAGCCTGGGAAGTCAGGCAGGCCCTGCCCTTGGCTGGAGGGACACCTGG
GCCTTCGTGGGACGAAAAGGAGAGGCTGAGTGTCACTGGGCAGATACGGAGTTGAACCGCCGCCGCAGGC
GCTTCTGCAGCAAAGTGGAGGGCTACGGGAGCGTGTGCAGCTGCAAGGACCCGACGCCTATTGAGTTCAG
CCCTGACCCACTTCCAGACAATAAGGTCCTCAATGTGCCTGTGGCTGTCATTGCAGGGAACCGGCCCAAT
TACCTGTACAGGATGCTGCGCTCTCTGCTCTCAGCCCAAGGGGTATCTCCACAGATGATAACGGTCTTCA
TTGATGGCTACTATGAGGAGCCAATGGATGTGGTGGCGCTGTTTGGTCTGAGAGGCATCCAGCATACTCC
TATCAGCATCAAGAACGCCCGTGTGTCTCAGCACTACAAGGCCAGCCTCACTGCCACTTTCAACCTGTTT
CCGGAGGCCAAGTTTGCTGTGGTTCTGGAAGAGGACCTGGACATTGCCGTGGATTTTTTCAGTTTCCTGA
GCCAGTCCATCCACCTGCTGGAGGAAGATGACAGCCTGTACTGCATCTCTGCCTGGAATGACCAGGGGTA
TGAACACACAGCTGAGGATCCAGCACTACTGTACCGTGTGGAGACCATGCCTGGGCTAGGATGGGTGCTC
AGGAAATCTTTATACAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAGAAAAGCTGTGGGATTGGGACA
TGTGGATGCGGATGCCGGAACAGCGCCGGGGCCGAGAGTGTATCATCCCGGATGTTTCCCGATCCTACCA
CTTTGGCATCGTCGGCCTCAACATGAACGGCTACTTTCATGAGGCCTACTTCAAGAAGCACAAGTTCAAC
ACAGTTCCAGGTGTCCAGCTCAGGAATGTAGACAGTCTGAAGAAAGAAGCTTATGAAGTGGAAATTCACA
GACTGCTCAGTGAGGCCGAGGTTTTGGACCACAGCAAGGACCCTTGTGAAGACTCCTTCCTGCCAGACAC
GGAGGGCCACACCTATGTGGCGTTTATCCGAATGGAGACAGATGATGACTTCGCCACCTGGACTCAGCTT
GCCAAGTGCCTCCATATTTGGGACCTGGATGTTCGTGGCAACCACCGGGGCCTGTGGAGATTATTTCGGA
AGAAGAACCACTTTTTGGTGGTGGGGGTCCCAGCCTCCCCTTACTCAGTGAAGAAGCCACCATCAGTCAC
CCCTATTTTCCTGGAGCCACCCCCAAAGGAAGAAGGAGCCCCAGGGGCTGCTGAACAAACGTGA

Translation (627 aa):
MDDWKPSPLIKPFGARKKRSWYLTWKYKLTNQRALRRFCQTGAVLFLLVTVIVNIKLILDTRRAISEANE
DPEPEQDYDEALGRLESPRRRGSSPRRVLDVEVYSSRSKVYVAVDGTTVLEDEAREQGRGIHVIVLNQAT
GHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKDTAKALLRSLGSQAGPALGWRDTW
AFVGRKGEAECHWADTELNRRRRRFCSKVEGYGSVCSCKDPTPIEFSPDPLPDNKVLNVPVAVIAGNRPN
YLYRMLRSLLSAQGVSPQMITVFIDGYYEEPMDVVALFGLRGIQHTPISIKNARVSQHYKASLTATFNLF
PEAKFAVVLEEDLDIAVDFFSFLSQSIHLLEEDDSLYCISAWNDQGYEHTAEDPALLYRVETMPGLGWVL
RKSLYKEELEPKWPTPEKLWDWDMWMRMPEQRRGRECIIPDVSRSYHFGIVGLNMNGYFHEAYFKKHKFN
TVPGVQLRNVDSLKKEAYEVEIHRLLSEAEVLDHSKDPCEDSFLPDTEGHTYVAFIRMETDDDFATWTQL
AKCLHIWDLDVRGNHRGLWRLFRKKNHFLVVGVPASPYSVKKPPSVTPIFLEPPPKEEGAPGAAEQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH