NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15253.1 Public Mus musculus 1 Dars1 23 108 98 CCDS HistoryNCBI Gene:226414Re-query CCDS DB by CCDS ID:15253.1Re-query CCDS DB by GeneID:226414See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15253.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027602.14 ENSMUSP00000027602.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027602.14Link to Ensembl Protein Viewer:ENSMUSP00000027602.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027602Re-query CCDS DB by Protein ID:ENSMUSP00000027602
Original member Current member NCBI NM_177445.5 NP_803228.2 Accepted alive Link to Nucleotide Sequence:NM_177445.5Link to Protein Sequence:NP_803228.2Re-query CCDS DB by Nucleotide ID:NM_177445Re-query CCDS DB by Protein ID:NP_803228Link to BLAST:NP_803228.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803228.2 501 Q922B2 501 100% 0 0

Chromosomal Locations for CCDS 15253.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 128364234 128364325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128366698 128366769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128366921 128367032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128368365 128368445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128369493 128369535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128372140 128372286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128373937 128374084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128376178 128376312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128378766 128378877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128387117 128387176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128389119 128389199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128391271 128391373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128405366 128405468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128413660 128413752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128415354 128415411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 128417152 128417217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGCCCAGCACCAACGCCAGCCGTAAGGGTCAGGAGAAGCCGCGGGAGATCGTGGACGCGGCGGAAGATT
ATGCTAAAGAGAGATATGGGATATCTTCTATGATACAATCACAAGAAAAGCCAGATAGAGTTTTGGTTCG
AGTTAAGGACCTGACAGTTCAAAAAGCTGATGATGTTGTTTGGGTCCGTGCAAGAGTTCATACAAGCAGA
GCAAAAGGGAAGCAGTGCTTCTTAGTCCTGAGGCAGCAGCAGTTTAATGTCCAGGCTCTTGTGGCGGTGG
GAGACCATGCAAGCAAGCAGATGGTTAAATTTGCTGCCAACATCAACAAAGAAAGTATTATTGACGTAGA
AGGTGTTGTGAGGAAAGTCAATCAGAAAATTGGAAGCTGTACCCAGCAGGATGTTGAGTTGCATGTCCAG
AAGATTTATGTGATCAGCTTGGCTGAACCTCGCCTGCCCTTGCAGCTGGATGATGCCATTCGGCCTGAAG
TGGAAGGAGAAGAGGACGGAAGAGCTACGGTTAACCAGGATACAAGATTAGACAACAGAGTCATTGACCT
TAGGACATCAACTAGTCAGGCCATCTTCCGTCTCCAGTCCGGCATCTGCCATCTCTTCCGAGAAACTTTA
ATTAACAAAGGTTTTGTGGAAATCCAAACTCCTAAAATAATTTCAGCTGCCAGTGAAGGAGGAGCCAATG
TTTTTACTGTGTCCTATTTTAAAAATAATGCCTACCTTGCTCAGTCTCCACAATTGTATAAGCAGATGTG
CATTTGTGCTGATTTTGAGAAGGTTTTCTGCATTGGACCAGTTTTCAGAGCTGAAGACTCCAATACCCAT
AGACATCTGACTGAATTTGTTGGTTTGGATATTGAAATGGCCTTTAATTATCATTACCATGAAGTTGTAG
AAGAGATTGCTGACACTTTGGTGCAAATATTCAAAGGACTTCAAGAAAGGTTTCAGACTGAAATTCAAAC
TGTGAGTAAACAGTTCCCATGTGAGCCGTTCAAATTTTTGGAGCCAACTTTAAGACTGGAGTATTGCGAG
GCTTTGGCAATGCTTAGAGAAGCTGGAGTTGAAATGGACGATGAGGAAGATCTAAGTACACCAAATGAAA
AACTGTTGGGTCGTTTGGTGAAGGAAAAGTATGATACAGACTTTTATGTTCTTGATAAATATCCATTGGC
TGTAAGACCTTTCTATACCATGCCTGACCCAAGAAATCCGAAACAGTCCAACTCTTACGATATGTTCATG
AGAGGAGAAGAAATATTGTCTGGAGCACAAAGAATCCATGATCCTCAGTTGCTTACAGAGAGAGCTTTAC
ACCATGGAATTGATTTGGAGAAAATCAAAGCTTACATTGATTCCTTCCGCTTTGGAGCTCCTCCTCATGC
TGGTGGTGGCATTGGGCTGGAAAGGGTGACGATGCTGTTTTTAGGATTGCATAACGTACGCCAGACCTCA
ATGTTCCCTCGTGACCCCAAACGACTCACGCCTTAA

Translation (501 aa):
MPSTNASRKGQEKPREIVDAAEDYAKERYGISSMIQSQEKPDRVLVRVKDLTVQKADDVVWVRARVHTSR
AKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIIDVEGVVRKVNQKIGSCTQQDVELHVQ
KIYVISLAEPRLPLQLDDAIRPEVEGEEDGRATVNQDTRLDNRVIDLRTSTSQAIFRLQSGICHLFRETL
INKGFVEIQTPKIISAASEGGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTH
RHLTEFVGLDIEMAFNYHYHEVVEEIADTLVQIFKGLQERFQTEIQTVSKQFPCEPFKFLEPTLRLEYCE
ALAMLREAGVEMDDEEDLSTPNEKLLGRLVKEKYDTDFYVLDKYPLAVRPFYTMPDPRNPKQSNSYDMFM
RGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRFGAPPHAGGGIGLERVTMLFLGLHNVRQTS
MFPRDPKRLTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH