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Report for CCDS1516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1516.1 Public Homo sapiens 1 USH2A 24 110 108 CCDS HistoryNCBI Gene:7399Re-query CCDS DB by CCDS ID:1516.1Re-query CCDS DB by GeneID:7399See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1516.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366942.3 ENSP00000355909.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366942.3Link to Ensembl Protein Viewer:ENSP00000355909.3Re-query CCDS DB by Nucleotide ID:ENST00000366942Re-query CCDS DB by Protein ID:ENSP00000355909
Original member Current member NCBI NM_007123.6 NP_009054.6 Accepted alive Link to Nucleotide Sequence:NM_007123.6Link to Protein Sequence:NP_009054.6Re-query CCDS DB by Nucleotide ID:NM_007123Re-query CCDS DB by Protein ID:NP_009054Link to BLAST:NP_009054.6

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009054.6 1546 O75445-2 1546 100% 0 0

Chromosomal Locations for CCDS 1516.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 216175238 216175482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216190223 216190367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216196553 216196722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216198315 216198584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216199627 216200121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216207273 216207431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216217387 216217550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216231953 216232136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216246585 216247226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216250903 216251098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216289280 216289410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216292175 216292370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216321883 216321976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216323474 216323695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216324168 216324352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216325305 216325599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216327591 216327654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216364953 216365085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216418514 216418679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 216421852 216422336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4641 nt):
ATGAATTGCCCAGTTCTTTCATTGGGCTCTGGCTTCTTGTTTCAGGTCATTGAAATGTTGATCTTTGCCT
ATTTTGCTTCAATATCCTTGACTGAGTCACGAGGTCTTTTCCCAAGGCTGGAGAACGTGGGAGCTTTCAA
GAAAGTTTCCATCGTGCCAACCCAAGCAGTATGTGGACTCCCAGACCGAAGCACTTTTTGTCACAGCTCT
GCTGCTGCTGAAAGTATTCAGTTCTGTACCCAGCGGTTTTGTATTCAGGATTGCCCATACAGATCTTCAC
ACCCTACCTACACTGCCCTTTTCTCAGCAGGCCTCAGTAGCTGCATCACACCAGACAAGAATGATCTGCA
TCCTAACGCCCATAGCAATTCTGCAAGTTTTATTTTTGGAAATCACAAGAGCTGCTTTTCTTCTCCTCCT
TCTCCAAAGCTGATGGCATCATTTACCTTAGCTGTATGGCTGAAACCTGAGCAACAAGGTGTAATGTGTG
TTATAGAAAAGACAGTAGATGGGCAGATTGTGTTCAAACTTACAATATCTGAGAAAGAGACCATGTTTTA
TTATCGCACAGTAAATGGTTTGCAACCTCCAATAAAAGTAATGACACTGGGGAGAATTCTTGTGAAGAAA
TGGATTCATCTTAGTGTGCAGGTGCATCAGACAAAAATCAGCTTCTTTATCAATGGCGTGGAGAAGGATC
ATACACCTTTCAATGCAAGAACTCTAAGTGGTTCAATTACAGATTTTGCATCTGGTACTGTGCAAATAGG
ACAGAGTTTAAATGGTTTAGAGCAGTTTGTCGGAAGAATGCAAGATTTTCGATTATACCAAGTGGCACTT
ACAAACAGAGAGATTCTGGAAGTCTTCTCTGGAGATCTTCTCAGATTGCATGCCCAATCACATTGCCGTT
GCCCTGGCAGCCACCCGCGGGTCCACCCTTTGGCACAGCGGTACTGCATTCCTAATGATGCAGGAGACAC
AGCTGATAATAGAGTGTCACGGTTGAATCCTGAAGCCCATCCTCTCTCTTTTGTCAATGATAATGATGTT
GGTACTTCATGGGTTTCAAATGTGTTTACAAACATTACACAGCTTAATCAAGGAGTGACTATTTCAGTTG
ATTTGGAAAATGGACAGTATCAGGTGTTTTATATTATCATTCAGTTCTTTAGTCCACAACCAACGGAAAT
AAGGATTCAAAGGAAGAAGGAAAATAGTTTAGATTGGGAGGACTGGCAATATTTTGCCAGGAATTGTGGT
GCTTTTGGAATGAAAAACAATGGAGATTTGGAAAAACCTGATTCTGTCAACTGTCTTCAGCTTTCCAATT
TTACTCCATATTCCCGTGGCAATGTCACATTTAGCATCCTGACACCTGGACCAAATTATCGTCCTGGATA
CAATAACTTCTATAATACCCCATCTCTTCAAGAGTTCGTAAAAGCCACGCAAATAAGGTTTCATTTTCAT
GGGCAGTACTATACAACTGAGACTGCTGTTAACCTCAGACACAGATATTATGCAGTGGACGAAATCACCA
TTAGTGGGAGATGTCAGTGCCATGGTCATGCCGATAACTGCGACACAACAAGCCAGCCATATAGATGCCT
CTGCTCCCAGGAGAGCTTCACTGAAGGACTTCATTGTGATCGCTGCTTGCCTCTTTATAATGACAAGCCT
TTCCGCCAAGGTGATCAAGTTTACGCTTTCAATTGTAAACCTTGTCAATGCAACAGCCATTCCAAAAGCT
GCCATTACAACATCTCTGTAGACCCATTTCCTTTTGAGCACTTCAGAGGGGGAGGAGGAGTTTGTGATGA
TTGTGAGCATAACACTACAGGAAGGAACTGTGAGCTGTGCAAGGATTACTTTTTCCGACAAGTTGGTGCA
GATCCTTCGGCCATAGATGTTTGCAAACCCTGTGACTGTGATACAGTTGGCACTAGAAATGGTAGCATTC
TTTGTGATCAGATTGGAGGACAGTGTAATTGTAAGAGACACGTGTCTGGCAGGCAGTGCAATCAGTGCCA
GAATGGATTCTACAATCTACAAGAGTTGGATCCTGATGGCTGCAGTCCCTGTAACTGCAATACCTCTGGG
ACAGTGGATGGAGATATTACCTGTCACCAAAATTCAGGCCAGTGCAAGTGCAAAGCAAACGTTATTGGGC
TTAGGTGTGATCATTGCAATTTTGGATTTAAATTTCTCCGAAGCTTTAATGATGTTGGATGTGAGCCCTG
CCAGTGTAACCTCCATGGCTCAGTGAACAAATTCTGCAATCCTCACTCTGGGCAGTGTGAGTGCAAAAAA
GAAGCCAAAGGACTTCAGTGTGACACCTGCAGAGAAAACTTTTATGGGTTAGATGTCACCAATTGTAAGG
CCTGTGACTGTGACACAGCTGGATCCCTCCCTGGGACTGTCTGTAATGCTAAGACAGGGCAGTGCATCTG
CAAGCCCAATGTTGAAGGGAGACAGTGCAATAAATGTTTGGAGGGAAACTTCTACCTACGGCAAAATAAT
TCTTTCCTCTGTCTGCCTTGCAACTGTGATAAGACTGGGACAATAAATGGCTCTCTGCTGTGTAACAAAT
CAACAGGACAATGTCCTTGCAAATTAGGGGTAACAGGTCTTCGCTGTAATCAGTGTGAGCCTCACAGGTA
CAATTTGACCATTGACAATTTTCAACACTGCCAGATGTGTGAGTGTGATTCCTTGGGGACATTACCTGGG
ACCATTTGTGACCCAATCAGTGGCCAGTGCCTGTGTGTGCCTAATCGTCAAGGAAGAAGGTGTAATCAGT
GTCAACCAGGTTTTTATATTTCTCCAGGCAATGCCACTGGCTGCCTGCCATGCTCATGCCATACAACTGG
TGCAGTTAATCACATCTGTAATAGCCTGACTGGTCAGTGTGTTTGCCAAGATGCTTCCATTGCTGGGCAA
CGTTGTGACCAATGCAAAGACCATTACTTTGGATTTGATCCTCAGACTGGAAGATGTCAGCCTTGTAATT
GTCATCTCTCAGGAGCCTTGAATGAAACCTGTCACTTGGTCACAGGCCAGTGTTTCTGTAAACAATTTGT
CACTGGCTCAAAGTGTGATGCTTGTGTTCCCAGTGCAAGCCACTTGGATGTCAACAATCTATTGGGTTGC
AGCAAAACTCCATTCCAGCAACCTCCGCCCAGAGGACAAGTTCAAAGTTCTTCTGCTATCAATCTCTCCT
GGAGTCCACCTGATTCTCCAAATGCCCACTGGCTTACTTACAGTTTACTCAGGGATGGTTTTGAAATCTA
CACAACAGAGGATCAATACCCATACAGTATTCAATACTTCTTAGACACAGACCTGTTACCATATACCAAA
TATTCCTATTACATTGAGACCACCAATGTGCATGGTTCAACAAGGAGTGTAGCTGTCACTTACAAGACAA
AACCAGGGGTCCCAGAGGGAAACTTGACTTTAAGTTATATCATTCCTATTGGCTCAGACTCTGTGACACT
TACCTGGACAACACTCTCAAATCAATCTGGTCCCATAGAGAAATATATTTTGTCCTGTGCCCCTTTGGCT
GGTGGTCAGCCATGTGTTTCCTACGAAGGTCATGAAACCTCAGCTACCATCTGGAATCTGGTTCCATTTG
CCAAGTACGATTTTTCTGTACAGGCGTGTACTAGCGGGGGCTGTTTACACAGCTTGCCCATTACAGTGAC
CACAGCCCAGGCCCCTCCCCAAAGACTAAGTCCACCTAAGATGCAGAAAATCAGTTCTACAGAACTTCAT
GTAGAATGGTCTCCACCAGCGGAACTAAATGGAATAATTATAAGATATGAACTATACATGAGAAGACTGA
GATCTACTAAAGAAACCACATCTGAGGAAAGTCGAGTTTTTCAGAGCAGTGGTTGGCTCAGTCCTCATTC
ATTTGTAGAATCGGCCAATGAAAATGCATTAAAACCTCCTCAAACAATGACAACCATCACTGGCTTGGAG
CCATACACCAAGTATGAGTTCAGAGTCTTAGCTGTGAATATGGCTGGAAGTGTGTCTTCTGCCTGGGTCT
CAGAAAGAACGGGAGAATCAGCACCTGTATTCATGATCCCTCCTTCAGTCTTTCCCCTCTCTTCGTACTC
TCTCAATATCTCCTGGGAGAAGCCAGCAGATAATGTTACAAGAGGAAAAGTTGTGGGGTATGACATCAAT
ATGCTTTCTGAACAATCACCTCAACAGTCTATTCCCATGGCGTTTTCACAGCTGTTGCACACTGCTAAAT
CCCAAGAACTATCTTACACTGTAGAAGGACTGAAACCTTATAGGATATATGAGTTTACTATTACTCTCTG
CAATTCAGTTGGTTGTGTGACCAGTGCTTCGGGAGCAGGACAAACTTTAGCAGCAGCACCAGCACAACTG
AGGCCACCTCTGGTTAAAGGAATCAACAGCACAACAATCCATCTTAGGTGGTTTCCACCTGAAGAACTGA
ATGGACCCTCTCCTATATATCAGCTGGAAAGGAGAGAGTCATCTCTACCAGCTCTGATGACCACGATGAT
GAAAGGAATCCGTTTCATAGGAAATGGGTATTGTAAATTTCCCAGCTCCACTCACCCAGTCAATACAGAC
TTCACTGGTAAGTGTGTTTGA

Translation (1546 aa):
MNCPVLSLGSGFLFQVIEMLIFAYFASISLTESRGLFPRLENVGAFKKVSIVPTQAVCGLPDRSTFCHSS
AAAESIQFCTQRFCIQDCPYRSSHPTYTALFSAGLSSCITPDKNDLHPNAHSNSASFIFGNHKSCFSSPP
SPKLMASFTLAVWLKPEQQGVMCVIEKTVDGQIVFKLTISEKETMFYYRTVNGLQPPIKVMTLGRILVKK
WIHLSVQVHQTKISFFINGVEKDHTPFNARTLSGSITDFASGTVQIGQSLNGLEQFVGRMQDFRLYQVAL
TNREILEVFSGDLLRLHAQSHCRCPGSHPRVHPLAQRYCIPNDAGDTADNRVSRLNPEAHPLSFVNDNDV
GTSWVSNVFTNITQLNQGVTISVDLENGQYQVFYIIIQFFSPQPTEIRIQRKKENSLDWEDWQYFARNCG
AFGMKNNGDLEKPDSVNCLQLSNFTPYSRGNVTFSILTPGPNYRPGYNNFYNTPSLQEFVKATQIRFHFH
GQYYTTETAVNLRHRYYAVDEITISGRCQCHGHADNCDTTSQPYRCLCSQESFTEGLHCDRCLPLYNDKP
FRQGDQVYAFNCKPCQCNSHSKSCHYNISVDPFPFEHFRGGGGVCDDCEHNTTGRNCELCKDYFFRQVGA
DPSAIDVCKPCDCDTVGTRNGSILCDQIGGQCNCKRHVSGRQCNQCQNGFYNLQELDPDGCSPCNCNTSG
TVDGDITCHQNSGQCKCKANVIGLRCDHCNFGFKFLRSFNDVGCEPCQCNLHGSVNKFCNPHSGQCECKK
EAKGLQCDTCRENFYGLDVTNCKACDCDTAGSLPGTVCNAKTGQCICKPNVEGRQCNKCLEGNFYLRQNN
SFLCLPCNCDKTGTINGSLLCNKSTGQCPCKLGVTGLRCNQCEPHRYNLTIDNFQHCQMCECDSLGTLPG
TICDPISGQCLCVPNRQGRRCNQCQPGFYISPGNATGCLPCSCHTTGAVNHICNSLTGQCVCQDASIAGQ
RCDQCKDHYFGFDPQTGRCQPCNCHLSGALNETCHLVTGQCFCKQFVTGSKCDACVPSASHLDVNNLLGC
SKTPFQQPPPRGQVQSSSAINLSWSPPDSPNAHWLTYSLLRDGFEIYTTEDQYPYSIQYFLDTDLLPYTK
YSYYIETTNVHGSTRSVAVTYKTKPGVPEGNLTLSYIIPIGSDSVTLTWTTLSNQSGPIEKYILSCAPLA
GGQPCVSYEGHETSATIWNLVPFAKYDFSVQACTSGGCLHSLPITVTTAQAPPQRLSPPKMQKISSTELH
VEWSPPAELNGIIIRYELYMRRLRSTKETTSEESRVFQSSGWLSPHSFVESANENALKPPQTMTTITGLE
PYTKYEFRVLAVNMAGSVSSAWVSERTGESAPVFMIPPSVFPLSSYSLNISWEKPADNVTRGKVVGYDIN
MLSEQSPQQSIPMAFSQLLHTAKSQELSYTVEGLKPYRIYEFTITLCNSVGCVTSASGAGQTLAAAPAQL
RPPLVKGINSTTIHLRWFPPEELNGPSPIYQLERRESSLPALMTTMMKGIRFIGNGYCKFPSSTHPVNTD
FTGKCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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