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Report for CCDS13452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13452.1 Public Homo sapiens 20 CSTF1 24 110 108 CCDS HistoryNCBI Gene:1477Re-query CCDS DB by CCDS ID:13452.1Re-query CCDS DB by GeneID:1477See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13452.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217109.9 ENSP00000217109.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217109.9Link to Ensembl Protein Viewer:ENSP00000217109.4Re-query CCDS DB by Nucleotide ID:ENST00000217109Re-query CCDS DB by Protein ID:ENSP00000217109
Original member Current member NCBI NM_001033521.2 NP_001028693.1 Accepted alive Link to Nucleotide Sequence:NM_001033521.2Link to Protein Sequence:NP_001028693.1Re-query CCDS DB by Nucleotide ID:NM_001033521Re-query CCDS DB by Protein ID:NP_001028693Link to BLAST:NP_001028693.1
Original member Current member NCBI NM_001033522.2 NP_001028694.1 Accepted alive Link to Nucleotide Sequence:NM_001033522.2Link to Protein Sequence:NP_001028694.1Re-query CCDS DB by Nucleotide ID:NM_001033522Re-query CCDS DB by Protein ID:NP_001028694Link to BLAST:NP_001028694.1
Original member Current member NCBI NM_001324.3 NP_001315.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001324.3Link to Protein Sequence:NP_001315.1Re-query CCDS DB by Nucleotide ID:NM_001324Re-query CCDS DB by Protein ID:NP_001315Link to BLAST:NP_001315.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028693.1 431 Q05048 431 100% 0 0
NP_001028694.1 431 Q05048 431 100% 0 0
NP_001315.1 431 Q05048 431 100% 0 0

Chromosomal Locations for CCDS 13452.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 56395553 56395721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56397207 56397484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56397644 56397841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56398967 56399357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 56403468 56403727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGTACAGAACCAAAGTGGGCTTGAAGGACCGCCAGCAGCTCTACAAGCTGATCATTAGCCAGCTGCTAT
ATGACGGCTACATCAGCATCGCCAATGGCCTCATCAATGAAATCAAGCCTCAGTCTGTGTGTGCACCCTC
GGAGCAGCTCCTGCATCTCATCAAACTCGGAATGGAAAACGATGACACCGCAGTTCAGTATGCAATTGGT
CGTTCAGATACTGTTGCCCCTGGCACAGGGATTGACCTGGAATTTGATGCAGATGTTCAGACTATGTCCC
CAGAGGCTTCTGAGTACGAAACATGCTATGTCACATCACATAAAGGACCATGCCGTGTAGCTACCTATAG
TAGAGATGGACAGTTAATAGCTACTGGGTCTGCTGATGCTTCGATAAAGATACTTGACACAGAGAGGATG
TTGGCCAAAAGTGCCATGCCAATAGAGGTCATGATGAATGAGACCGCACAACAAAATATGGAAAACCACC
CAGTGATTCGAACTCTTTATGACCATGTGGATGAAGTCACGTGCCTTGCTTTCCACCCAACAGAACAGAT
CCTGGCTTCTGGTTCAAGGGATTATACTCTTAAATTATTTGATTATTCCAAACCATCAGCAAAAAGAGCC
TTCAAATACATTCAGGAAGCTGAAATGTTACGTTCCATCTCTTTTCATCCTTCTGGAGACTTTATACTTG
TCGGAACTCAGCATCCTACTCTTCGCCTTTATGATATCAACACCTTTCAATGTTTTGTCTCTTGCAATCC
TCAAGATCAACACACCGATGCTATATGTTCCGTTAATTACAATTCTAGTGCCAATATGTACGTAACTGGA
AGCAAGGACGGCTGCATCAAATTATGGGATGGTGTTTCAAATCGATGCATCACAACTTTTGAGAAAGCAC
ATGACGGTGCTGAAGTTTGTTCTGCCATTTTTTCCAAAAATTCTAAATACATTCTCTCAAGTGGAAAAGA
CTCTGTAGCTAAACTTTGGGAAATATCAACGGGACGAACACTGGTCAGATACACGGGCGCGGGTTTAAGT
GGACGCCAGGTGCACCGGACACAGGCTGTGTTTAACCACACCGAGGACTATGTGTTGCTGCCCGACGAGA
GGACGATCAGTCTTTGCTGCTGGGACTCGAGGACAGCCGAGCGGAGAAACCTGCTGTCGTTGGGGCACAA
CAATATTGTACGCTGCATAGTGCACTCCCCCACCAACCCCGGGTTCATGACGTGCAGCGATGACTTCAGA
GCGCGGTTTTGGTACCGGAGATCGACCACTGACTGA

Translation (431 aa):
MYRTKVGLKDRQQLYKLIISQLLYDGYISIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDTAVQYAIG
RSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERM
LAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSKPSAKRA
FKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCNPQDQHTDAICSVNYNSSANMYVTG
SKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGAGLS
GRQVHRTQAVFNHTEDYVLLPDERTISLCCWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRSTTD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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