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Report for CCDS12416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12416.1 Public Homo sapiens 19 POP4 24 110 108 CCDS HistoryNCBI Gene:10775Re-query CCDS DB by CCDS ID:12416.1Re-query CCDS DB by GeneID:10775See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12416.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000585603.6 ENSP00000465213.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000585603.6Link to Ensembl Protein Viewer:ENSP00000465213.1Re-query CCDS DB by Nucleotide ID:ENST00000585603Re-query CCDS DB by Protein ID:ENSP00000465213
Original member Current member NCBI NM_006627.3 NP_006618.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006627.3Link to Protein Sequence:NP_006618.1Re-query CCDS DB by Nucleotide ID:NM_006627Re-query CCDS DB by Protein ID:NP_006618Link to BLAST:NP_006618.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006618.1 220 O95707 220 100% 0 0

Chromosomal Locations for CCDS 12416.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 29606319 29606325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29608657 29608709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29610409 29610632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29611862 29611939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29612117 29612178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29613871 29613972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29615244 29615380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGAAGAGTGTGATCTACCATGCATTGTCTCAGAAAGAGGCGAATGACTCCGATGTCCAGCCTTCAGGAG
CACAGCGGGCCGAGGCCTTCGTGAGGGCCTTCCTGAAGCGCAGCACGCCCCGCATGAGCCCGCAGGCCCG
CGAGGACCAGCTGCAGCGCAAGGCGGTGGTCCTGGAGTACTTCACCCGCCACAAGCGCAAGGAGAAGAAG
AAGAAAGCCAAAGGCCTCTCTGCCAGGCAAAGGAGGGAGCTGCGGCTCTTTGACATTAAACCAGAGCAGC
AGAGATACAGCCTTTTCCTCCCTCTCCATGAACTCTGGAAACAGTACATCAGGGACCTGTGCAGTGGGCT
CAAGCCAGACACGCAGCCACAGATGATTCAGGCCAAGCTCTTAAAGGCAGATCTTCACGGGGCTATTATT
TCAGTGACAAAATCCAAATGCCCCTCTTATGTGGGTATTACAGGAATCCTTCTACAGGAAACAAAGCACA
TTTTCAAAATTATCACCAAAGAAGACCGCCTGAAAGTTATCCCCAAGCTAAACTGCGTGTTCACTGTGGA
AACCGATGGCTTTATTTCCTACATTTACGGGAGCAAATTCCAGCTTCGGTCAAGTGAACGGTCTGCGAAG
AAGTTCAAAGCGAAGGGAACGATTGACCTGTGA

Translation (220 aa):
MKSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYFTRHKRKEKK
KKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADLHGAII
SVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVETDGFISYIYGSKFQLRSSERSAK
KFKAKGTIDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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