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Report for CCDS12269.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12269.2 Public Homo sapiens 19 ZNF625 24 110 108 CCDS HistoryNCBI Gene:90589Re-query CCDS DB by CCDS ID:12269.2Re-query CCDS DB by GeneID:90589See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12269.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12269.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000439556.3 ENSP00000394380.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000439556.3Link to Ensembl Protein Viewer:ENSP00000394380.2Re-query CCDS DB by Nucleotide ID:ENST00000439556Re-query CCDS DB by Protein ID:ENSP00000394380
Original member Current member NCBI NM_145233.4 NP_660276.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145233.4Link to Protein Sequence:NP_660276.2Re-query CCDS DB by Nucleotide ID:NM_145233Re-query CCDS DB by Protein ID:NP_660276Link to BLAST:NP_660276.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660276.2 372 Q96I27-2 372 100% 0 0

Chromosomal Locations for CCDS 12269.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12145297 12146224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12147395 12147455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12147676 12147802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12156556 12156558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGATTCAGTGGTCTTTGAGGATGTAGATGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATCCTT
CCCAGAAGAATCTCTACAGAGATGTGATGCAGGAAACCTTCAGGAACCTGGCTTCTGTAGGAAAAAAATG
GAAAGATCAGAAAATTGAAGATGAGTACAAAAATCCCAGGAGAAACCTAAGAGGTCTTATGGGAGAGAGA
CTCTTAGAAAGTAAGAAAGATCATCAGCATGGAGAAATTTTGACCCAGGTTCCAGATGACATGCTGAAGA
AGAAAACTCCCCGAGTAAAATCATGTGGAGAAGTCAGCGTGGGTCATGCATCCCTTAATAGGCACCACAG
AGCTGACACTGGACACAAGCCATATGAGTATCAGGAATATGGACAGAAGCCATATAAATGTACATACTGT
AAGAAAGCCTTCAGTGATCTCCCCTACTTTCGAACACATGAATGGGCTCACACTGGGGGGAAACCTTATG
ATTGTGAGGAATGTGGAAAAAGCTTTATTTCCCGTTCAAGCATTCGAAGACACAGGATAATGCACAGTGG
AGATGGACCCTACAAATGTAACTTTTGTGGGAAAGCCTTGATGTGTCTCAGTTTGTATCTTATCCACAAA
CGAACTCACACTGGAGAGAAACCATATGAATGTAAACAGTGTGGTAAAGCCTTTAGTCATTCTGGTAGCC
TTCGAATACATGAAAGAACTCACACTGGAGAGAAGCCTTATGAATGCAGTGAGTGTGGGAAAGCATTCCA
TAGTTCCACATGCCTCCATGCACATAAAATAACTCACACTGGGGAGAAGCCGTATGAATGTAAACAGTGT
GGGAAAGCCTTTGTTTCTTTCAATTCCGTTCGATATCATGAAAGAACTCACACTGGAGAGAAGCCCTATG
AATGTAAGCAATGTGGGAAAGCCTTCAGATCTGCCTCGCACCTTCGAACACATGGAAGGACTCACACTGG
AGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCCTTTGGATGTGCCTCGAGCGTTAAAATCCATGAA
AGGACTCACACTGGAGAAAAACCCTGTAGCTCCAACACTTCGAAAGGCCAAGGCGAGAAGATTGCTTAA

Translation (372 aa):
MDSVVFEDVDVNFTQEEWALLDPSQKNLYRDVMQETFRNLASVGKKWKDQKIEDEYKNPRRNLRGLMGER
LLESKKDHQHGEILTQVPDDMLKKKTPRVKSCGEVSVGHASLNRHHRADTGHKPYEYQEYGQKPYKCTYC
KKAFSDLPYFRTHEWAHTGGKPYDCEECGKSFISRSSIRRHRIMHSGDGPYKCNFCGKALMCLSLYLIHK
RTHTGEKPYECKQCGKAFSHSGSLRIHERTHTGEKPYECSECGKAFHSSTCLHAHKITHTGEKPYECKQC
GKAFVSFNSVRYHERTHTGEKPYECKQCGKAFRSASHLRTHGRTHTGEKPYECKQCGKAFGCASSVKIHE
RTHTGEKPCSSNTSKGQGEKIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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