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Report for CCDS25046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25046.1 Public Mus musculus 11 Serpinf2 23 108 98 CCDS HistoryNCBI Gene:18816Re-query CCDS DB by CCDS ID:25046.1Re-query CCDS DB by GeneID:18816See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043696.8 ENSMUSP00000048704.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043696.8Link to Ensembl Protein Viewer:ENSMUSP00000048704.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000043696Re-query CCDS DB by Protein ID:ENSMUSP00000048704
Original member Current member EBI ENSMUST00000108437.7 ENSMUSP00000104076.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108437.7Link to Ensembl Protein Viewer:ENSMUSP00000104076.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108437Re-query CCDS DB by Protein ID:ENSMUSP00000104076
Original member Current member NCBI NM_008878.2 NP_032904.1 Accepted alive Link to Nucleotide Sequence:NM_008878.2Link to Protein Sequence:NP_032904.1Re-query CCDS DB by Nucleotide ID:NM_008878Re-query CCDS DB by Protein ID:NP_032904Link to BLAST:NP_032904.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032904.1 491 Q61247 491 100% 0 0

Chromosomal Locations for CCDS 25046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75432403 75432815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75433137 75433341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75435898 75436040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75436385 75436588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75436727 75436870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75437354 75437555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75438038 75438100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75438214 75438252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75438392 75438454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGGCACTGCTCCGGGGGCTCCTCGTACTCAGCTTGTCCTGCCTGCAAGGTCCCTGTTTCACGTTCTCTC
CGGTGAGCGCCGTGGATCTCCCGGGCCAGCAGCCAGTGAGTGAGCAGGCCCAGCAGAAGCTGCCCCTGCC
TGCCCTCTTCAAGTTGGACAACCAGGATTTTGGTGACCATGCTACCCTCAAGAGGTCCCCAGGACACTGC
AAGAGTGTCCCAACTGCAGAGGAGACTCGCAGGCTGGCTCAGGCCATGATGGCTTTTACTACTGACCTGT
TCTCTTTGGTGGCCCAAACATCTACCAGCTCCAACCTTGTCCTGTCACCCCTTAGTGTGGCCCTAGCACT
CTCTCACCTGGCACTAGGTGCTCAGAACCAAACACTACACAGCTTGCATCGAGTGTTGCACATGAACACA
GGATCCTGCCTCCCGCATCTACTGAGCCATTTCTACCAGAACCTAGGCCCAGGGACAATCCGACTGGCTG
CCAGAATATACCTGCAGAAAGGATTTCCCATCAAAGACGATTTCCTGGAGCAATCGGAAAGGCTCTTTGG
TGCGAAGCCCGTGAAACTGACTGGAAAGCAGGAGGAAGACCTGGCGAACATCAACCAATGGGTGAAGGAG
GCCACAGAGGGGAAGATTGAGGATTTCCTCTCTGAGCTGCCGGATAGCACCGTGCTGCTTCTCCTCAACG
CCATCCACTTTCACGGTTTCTGGAGGACCAAGTTTGACCCGAGCCTCACCCAGAAAGATTTCTTCCACCT
GGATGAGCGGTTCACAGTGTCGGTGGACATGATGCACGCGGTGTCATATCCTCTTCGATGGTTCCTGCTG
GAGCAACCTGAGATACAGGTGGCTCATTTCCCCTTTAAGAACAACATGAGCTTTGTGGTCGTGATGCCCA
CTTATTTTGAGTGGAACGTGTCCGAGGTACTAGCCAACCTGACCTGGGATACTCTGTACCATCCCTCGCT
GCAGGAGAGGCCCACCAAGGTGTGGCTGCCTAAACTCCATCTGCAACAGCAGCTGGACCTGGTGGCCACC
CTCAGCCAACTGGGCCTGCAGGAATTGTTCCAGGGCCCAGACCTTCGTGGGATCTCTGAGCAGAATCTGG
TGGTGTCTAGCGTGCAACATCAGTCTACCATGGAGCTCAGCGAGGCTGGTGTGGAGGCAGCCGCAGCTAC
CAGCGTAGCCATGAATCGAATGTCCCTCTCCTCCTTCACTGTGAACCGACCCTTCCTCTTCTTCATCATG
GAGGACACCATAGGCGTGCCCCTCTTTGTGGGCAGTGTGAGGAACCCTAACCCCAGCGCGCTGCCCCAGC
TCCAGGAACAGCGAGATTCCCCTGACAACAGGCTCATAGGCCAGAATGACAAAGCTGACTTCCATGGAGG
CAAGACCTTTGGTCCTGACTTGAAACTTGCACCCCGCATGGAGGAAGACTACCCCCAGTTCAGCTCCCCC
AAGTGA

Translation (491 aa):
MALLRGLLVLSLSCLQGPCFTFSPVSAVDLPGQQPVSEQAQQKLPLPALFKLDNQDFGDHATLKRSPGHC
KSVPTAEETRRLAQAMMAFTTDLFSLVAQTSTSSNLVLSPLSVALALSHLALGAQNQTLHSLHRVLHMNT
GSCLPHLLSHFYQNLGPGTIRLAARIYLQKGFPIKDDFLEQSERLFGAKPVKLTGKQEEDLANINQWVKE
ATEGKIEDFLSELPDSTVLLLLNAIHFHGFWRTKFDPSLTQKDFFHLDERFTVSVDMMHAVSYPLRWFLL
EQPEIQVAHFPFKNNMSFVVVMPTYFEWNVSEVLANLTWDTLYHPSLQERPTKVWLPKLHLQQQLDLVAT
LSQLGLQELFQGPDLRGISEQNLVVSSVQHQSTMELSEAGVEAAAATSVAMNRMSLSSFTVNRPFLFFIM
EDTIGVPLFVGSVRNPNPSALPQLQEQRDSPDNRLIGQNDKADFHGGKTFGPDLKLAPRMEEDYPQFSSP
K


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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