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Report for CCDS16734.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16734.1 Public Mus musculus 2 Tgm6 23 108 98 CCDS HistoryNCBI Gene:241636Re-query CCDS DB by CCDS ID:16734.1Re-query CCDS DB by GeneID:241636See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16734.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028888.4 ENSMUSP00000028888.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028888.4Link to Ensembl Protein Viewer:ENSMUSP00000028888.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028888Re-query CCDS DB by Protein ID:ENSMUSP00000028888
Original member NCBI NM_177726.4 NP_808394.1 Updated not alive Link to Nucleotide Sequence:NM_177726.4Link to Protein Sequence:NP_808394.1Re-query CCDS DB by Nucleotide ID:NM_177726Re-query CCDS DB by Protein ID:NP_808394
Current member NCBI NM_177726.5 NP_808394.1 Accepted alive Link to Nucleotide Sequence:NM_177726.5Link to Protein Sequence:NP_808394.1Re-query CCDS DB by Nucleotide ID:NM_177726Re-query CCDS DB by Protein ID:NP_808394Link to BLAST:NP_808394.1

Chromosomal Locations for CCDS 16734.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130123362 130123368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130135750 130135923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130136429 130136671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130137376 130137494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130138828 130138956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130141165 130141342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130141773 130141911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130143201 130143304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130143372 130143614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130144950 130145291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130151274 130151428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130151676 130151809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130152960 130153113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGGCAGGGGTCAGAATCACCAAGGTCGACTGGCAGCATTCGAAAAATGGTGCTGCCCACCACACCCAAG
ATTACCCTTGCTCTGAACTGGTGGTTCGAAGAGGCCAGTTATTCAGTCTCACCCTGGATCTGAGTAGAGT
CCTGGACAGCGAGGAGGCCCTCATCTTCACCGTGGAGACAGGACCTCACGCATCCGAGGCTCTCCACACC
AAAGCCGTATTCCAGACAGCAGAGCTAGAAATAGGGGACACTTGGACAGCTGCAAAAGAGGAACAGACAG
AGAACACAATCACCGTCAGCCTCTCGAGCCCTTCCAATGCAGTCATTGGCCGATACCTGCTGAGTGTCAG
GCCCTCTTCCCGCAGGAAACACAGTGACCGAAAGCTGGGCCAGTTTATTCTCCTGTTCAATCCCTGGTGC
CCAGAGGACGATGTGTTTCTGGACTCAGAGGAAGAGAGGCAGGAGTACGTGCTTAACGACAGTGGCGTCA
TCTTCCGAGGCGTGGAGAAGCACATCCGAGCCCAGGGCTGGAACTACGGGCAGTTTGAAGAGGACATCCT
GAACATCTGCCTCTCCATTCTGGACCGAAGTCCTAGTCACCAGGAGGACCCAGCCACCGATGTGTCCCAC
CGCCATGACCCAGTCTATGTCACCAGGATCATCAGTGCCATGGTGAACAGCAACAATGACCGAGGTGTGG
TACAAGGCCAGTGGCAGGGCAAATATGGAGGTGGTACCAACCCACTGAACTGGCGTGGCAGTGTGGCCAT
CCTACAGAAGTGGTTCAAGGGCAGGTACAAGCCAGTCAAATATGGCCAGTGCTGGGTCTTCGCTGGAGTC
ATGTGCACAGTCCTCAGGTGCCTGGGGATCGCAACCAGGGTGGTGTCCAACTTCAACTCAGCCCACGACA
CCGATGGCAATCTGAGTGTGGACAAATATGTGGACTCTTATGGCCGAACCCTGGAGGACCTGACAGAAGA
CAGCATGTGGAACTTCCACGTCTGGAATGAGAGCTGGTTTGCACGACAGGACCTGGGCCCATCCTATGAT
GGCTGGCAGGTTCTGGATGCCACTCCCCAAGAGGAGAGCGAAGGTATGTTCCGGTGTGGTCCTGCCTCGG
TCACTGCCATCCGTGAAGGTGACGTGCATCTAGCCCATGATGGCCCCTTCGTCTTTGCGGAGGTCAATGC
AGACTACATCACCTGGCTATGGCACGAGGACAAGAGGCGGGAGCGTGTGTACTCGGACACCAAGAAGATC
GGCAGGTGCATCAGTACCAAGGCAGTGGGCAGTGACTCTCGTGTGGACATTACAGGCCTCTACAAGTATC
CAGAAGGGTCCCGGAAGGAGAGGCAGGTGTACAGCAAAGCTGTGAAGAAACTGCTAAGTGTGGAAGCCTG
GGGGAGGAGGAGGCGGATCCGCAGGGCCAGCGTGCGCGGTGTCTGGCGCGACGACCTCCTGGAACCGGTC
ACCAAACCCAGCATCACTGGCAAGTTCAAAGTGCTGGAGCCACCGGTGCTCGGCCAGGACCTGAAGCTGG
CTCTGTGCTTGACCAACCTCACCGCCAGGGCCCAGCGGGTCCGAGTCAATGTGAGCGGCGCCACCATCCT
CTATACCCGCAAGCCTGTGGCAGAGATCCTGCGTGAATCCCACACCGTGAAGCTGGGGCCACTAGAAGAA
AAGAAGATCCCAGTCACAATATCTTACTCTCAGTACAAAGGAGACCTGACAGAAGACAAGAAGATCCTGT
TGGCTGCCATGTGCCTTGTCAGTAAGGGCGAGAAGCTCCTGGTGGAGAAGGACATTACCCTGGAGGACTT
CATCACCATCAAGGTGCTGGGGCCAGCAGTGGTAGGAGTGACAGTCACTGTGGAAGTCTTGGTGATCAAC
CCCCTCTCGGAGAGCGTAAAGGACTGTGTGCTGATGGTAGAGGGCAGTGGCCTTCTCCAAGGACAGCTAA
GTATTGAGGTGCCCAGCTTGCAGCCTCAGGAGAAGGCCTTGATTCAATTCAACATAACCCCTTCCAAGAG
TGGCCCCAGGCAGCTGCAGGTGGACCTTGTCAGCTCACAGTTCCCAGACATCAAGGGCTTTGTGATCATC
CACGTGGCTACAGCCAAGTGA

Translation (706 aa):
MAGVRITKVDWQHSKNGAAHHTQDYPCSELVVRRGQLFSLTLDLSRVLDSEEALIFTVETGPHASEALHT
KAVFQTAELEIGDTWTAAKEEQTENTITVSLSSPSNAVIGRYLLSVRPSSRRKHSDRKLGQFILLFNPWC
PEDDVFLDSEEERQEYVLNDSGVIFRGVEKHIRAQGWNYGQFEEDILNICLSILDRSPSHQEDPATDVSH
RHDPVYVTRIISAMVNSNNDRGVVQGQWQGKYGGGTNPLNWRGSVAILQKWFKGRYKPVKYGQCWVFAGV
MCTVLRCLGIATRVVSNFNSAHDTDGNLSVDKYVDSYGRTLEDLTEDSMWNFHVWNESWFARQDLGPSYD
GWQVLDATPQEESEGMFRCGPASVTAIREGDVHLAHDGPFVFAEVNADYITWLWHEDKRRERVYSDTKKI
GRCISTKAVGSDSRVDITGLYKYPEGSRKERQVYSKAVKKLLSVEAWGRRRRIRRASVRGVWRDDLLEPV
TKPSITGKFKVLEPPVLGQDLKLALCLTNLTARAQRVRVNVSGATILYTRKPVAEILRESHTVKLGPLEE
KKIPVTISYSQYKGDLTEDKKILLAAMCLVSKGEKLLVEKDITLEDFITIKVLGPAVVGVTVTVEVLVIN
PLSESVKDCVLMVEGSGLLQGQLSIEVPSLQPQEKALIQFNITPSKSGPRQLQVDLVSSQFPDIKGFVII
HVATAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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