Software for Bioinformatics
Please check my Bibliography page for software
in published articles.
FLANK: A computer
program for calculating over-alignment parameters
M.C. Frith, Y. Park, S.L. Sheetlin, J.L.
Spouge
"The
whole alignment and nothing but the alignment: The problem of spurious
alignment flanks"
(2008) Genome Research submitted
Supporting materials: FLANK 1.0
: 2008-06-10 (Program) and Files
A-GLAM: A computer
program for finding regulatory elements
N. Kim, K.
Tharakaraman, L. Mariño-Ramírez, J. L. Spouge
"Finding
sequence motifs with Bayesian models incorporating positional information: an
application to transcription factor binding sites."
(2008) BMC Bioinformatics 4:262.
Supporting materials: AGLAM
2.1 : 2008-02-20
Last update: Jun 10, 2008
Comments or questions to John L. Spouge (spouge@ncbi.nlm.nih.gov)
Credits: John L. Spouge