|
Publications (all)
Publications
in
discipline - oriented publication
servers:
(lists
are partially overlapping)
Publications
in PubMed (Computational Biology)
Publications
in DBLP server (Computer Science)
Publications
in MathSciNet
(Math and some CS)
Ten representative publications
Kann MG, Shoemaker BA, Panchenko AR, Przytycka TM. Correlated Evolution of Interacting Proteins:
Looking Behind the Mirror Tree. J Mol Biol. 2009
Zotenko E, Mestre
J, O'Leary DP, Przytycka TM. Why
do hubs in the yeast protein interaction network tend to be essential:
reexamining the connection between the network topology and essentiality. PLos Comput Biol
2008 Aug
1;4(8):e1000140 Highlighted in Nature Genetics Review Genetics
Zheng J, Rogozin IB, Koonin EV, Przytycka TM. Support for the Coelomata clade of animals from a rigorous analysis of
the pattern of intron conservation Mol Biol Evol. 2007 Nov;24(11):2583-92. (preliminary version presented at RECOMB Comparative
Genomics 2007)
Przytycka T. Stability of characters and construction of
phylogenetic trees. J Comput Biol. 2007 Jun;14(5):539-49
(preliminary version presented at RECOMB 2007)
Guimarães
KS, Jothi R, Zotenko E, Przytycka TM. Predicting
domain-domain interactions using a parsimony approach. Genome Biol. 2006
;7(11):R104 
Jothi R, Cherukuri
PF, Tasneem A, Przytycka TM. Co-evolutionary analysis of domains in
interacting proteins reveals insights into domain-domain interactions
mediating protein-protein interactions
JMol Biol. 2006 Sep
29;362(4):861-75 ( Faculty 1000 recommended)
Zotenko E,
Guimarães KS, Jothi R, Przytycka TM.
Decomposition of overlapping protein
complexes: a graph theoretical method for analyzing static and dynamic protein
associations. Algorithms Mol Biol. 2006 Apr 26;1(1):7.  (preliminary version presented at RECOMB Systems Biology 2005)
Jothi R, Kann MG, Przytycka TM. Predicting protein-protein interaction by
searching evolutionary tree automorphism space. Bioinformatics.
2005 Jun;21 Suppl
1:i241-50. (ISMB 2005)
Przytycka
T, Aurora R, Rose GD. A protein
taxonomy based on secondary structure. Nat Struct Biol. 1999 Jul;6(7):672-82.
Przytycka
TM Transforming rooted agreement
into unrooted agreement.
J Comput Biol. 1998 (and
STOC 1997)
Links
to preliminary versions of
selected
book chapters and encyclopedia articles
Protein interaction network based
prediction of
domain-domain and domain-peptide interactions Guimarães KS & Przytycka TM. Protein-protein
interactions and networks Panchenko and Przytycka (Eds)
Springer, 2008
Frach-Przytycka-Thorup Algorithm for Agreement of three or more trees;
Przytycka TM. Encyclopedia of Algorithms; Kao, Ming
Yang (Ed.) Springer (2008).
Graph theoretical
approaches to delineate dynamics of biological processes. Przytycka TM
& Zotenko in Bioinformatics Algorithms: Techniques and Application; Ion Mandoiu and
Alexander Zelikovsky (Eds).
Wiley 2008
Computational
approaches to predict protein-protein and domain-domain interactions.
Jothi R & Przytycka TM in Bioinformatics Algorithms: Techniques and
Application; Ion
Mandoiu and Alexander Zelikovsky (Eds). Wiley 2008
Hidden Markov Models. Przytycka, TM
in Nature
Encyclopedia of the Human Genome Nature Publishing Group (2003).
|
