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Biological Networks and Protein Interaction
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Analysis of overlapping Protein Complexes
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Predicting domain-domain interactions from PPI network
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MORPH- predicting protein interactions by
searching tree automorphism space
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RCDP – predicting domain-domain interaction
from co-evolution principle
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Separating co-speciation from
functional co-evolution in interacting domains
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DOMINE – a data base of protein
domain interactions
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Discovering functional linkage using
phylogenetic foot printing
Evolution of Protein Sequence and Proteins
Sequence Analysis
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Graph theoretical insight into evolution of
multidomain proteins
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COCO-CL-hierarchical clustering of Homology
Relation
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Study of selective pressure
acting on conserved ortholog groups
Structural Biology
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Structure Comparison by Projection Methods
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Predicting beta-sheet topology
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Protein folding simulations
Phylogenetics
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Evolutionary trees and graph motifs
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Support for the Coelomata hypothesis from intron
pattern conservation
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