Specific binding sequences recognized by HMG-1 box proteins
Protein Binding Site Reference
SRY Group
IRE-ABP T T C A A A G Nasrin et al., 1991
LEF-1 T T C A A A G G Giese et al., 1991
mat1-Mc A A C A A A G Dooijes et al., 1993
mt-a-1 C A A A G Philley & Staben, 1994
ROX1 R R R T A A C A A G A G Lowry et al., 1990
SOX-5 A A C A A T Connor et al., 1994
SRY W W C A A A G Nasrin et al., 1991
Harley et al., 1991
ste11 A A C A A A G A A Sugimoto et al., 1991
TCF-1 W W C A A A G Oosterwegel et al., 1991a
Oosterwegel et al., 1991b
SSRP Group
T160, heptamer site C A C A G T G Shirakata et al., 1991
T160, nonamer site A C A A A A A C C Shirakata et al., 1991
UBF1-3-6
mtTF1 T T T T G A C A T Fisher et al., 1987
mtsHMG A G G T T T T T T A C A T Boisssoneault & Lau, 1993
The IUPAC degenerate nucleotide base codes are:
R = G or A; W = A or T; Y = C or T.