Positioning of CGCGA/TCGCG

From Table IVa: Position-dependent pentamers: Clustered pentamers
CGCGA and/or TCGCG are found in the upstream regions of these late_g1 yeast genes in the following intervals:

-551 to -600 nt upstream of the ATG start codon
6 elements found in 5 genes

```
YDL127W	PCL2	G1 cyclin
```
```
YGL028C	SCW11	soluble cell wall protein
```
```
YHR113W		Vacuolar aminopeptidase
```
```
YLR381W		
```
```
YMR199W	CLN1	G(sub)1 cyclin
```

-501 to -550 nt upstream of the ATG start codon
5 elements found in 2 genes

YKL045W	PRI2	p58 polypeptide of DNA primase

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

-451 to -500 nt upstream of the ATG start codon
3 elements found in 2 genes

```
YDL119C		
```

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

-401 to -450 nt upstream of the ATG start codon
8 elements found in 7 genes

YBR073W	RDH54	Putative helicase similar to RAD54

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

```
YLR326W		
```
```
YLR381W		
```

YML027W	YOX1	Homeobox-domain containing protein

-351 to -400 nt upstream of the ATG start codon
20 elements found in 12 genes

```
YDL124W		
```
```
YDL127W	PCL2	G1 cyclin
```

YDL227C	HO	Homothallic switching endonuclease

```
YGR109C	CLB6	B-type cyclin
```

YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

YLR121C	YPS4	GPI-anchored aspartic protease

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

YLR383W	RHC18	involved in recombination repair

YML027W	YOX1	Homeobox-domain containing protein

```
YNL300W		
```

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

```
YPL014W		
```

-301 to -350 nt upstream of the ATG start codon
16 elements found in 13 genes

```
YBR070C		involved in osmotolerance
```
```
YBR071W		
```

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

YDR297W	SUR2	Syringomycin response protein 2

YHR038W	FIL1	Putative mitochondrial ribosome recycling factor

```
YJL187C	SWE1	protein kinase homolog
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YKL042W	SPC42	component of the spindle pole body

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YLR376C		
```

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

YPR175W	DPB2	DNA polymerase epsilon, subunit B

-251 to -300 nt upstream of the ATG start codon
10 elements found in 8 genes

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

YGR152C	RSR1	GTP-binding protein, ras superfamily

```
YJL187C	SWE1	protein kinase homolog
```

YKL042W	SPC42	component of the spindle pole body

YMR179W	SPT21	non-specific DNA binding protein

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

-201 to -250 nt upstream of the ATG start codon
13 elements found in 12 genes

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

YDL018C	ERP3	p24 protein involved in membrane trafficking

YDL227C	HO	Homothallic switching endonuclease

YDR507C	GIN4	putative serine/threonine kinase

YLR121C	YPS4	GPI-anchored aspartic protease

```
YLR183C		
```
```
YLR326W		
```
```
YLR381W		
```

YML027W	YOX1	Homeobox-domain containing protein

YMR179W	SPT21	non-specific DNA binding protein

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

```
YPR120C	CLB5	B-type cyclin
```

-151 to -200 nt upstream of the ATG start codon
27 elements found in 20 genes

```
YAR003W		beta transducin domain
```
```
YBR070C		involved in osmotolerance
```
```
YBR071W		
```
```
YCL024W		Ser/Thr protein kinase
```
```
YDL101C	DUN1	protein kinase
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

```
YHR153C	SPO16	sporulation protein
```
```
YJL181W		
```

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

```
YKR077W		
```

YLR121C	YPS4	GPI-anchored aspartic protease

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

YLR383W	RHC18	involved in recombination repair

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL309W	STB1	Interacts with the putative transcription factor Sin3p

YPL124W	NIP29	spindle pole body associated protein

```
YPL127C	HHO1	histone H1
```

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

-101 to -150 nt upstream of the ATG start codon
28 elements found in 25 genes

YBR073W	RDH54	Putative helicase similar to RAD54

```
YDL010W		
```
```
YDL164C	CDC9	DNA ligase
```
```
YGL027C	CWH41	glucosidase I
```

YHR110W	ERP5	p24 protein involved in membrane trafficking

```
YHR154W	ESC4	involved in silencing
```

YIL026C	IRR1	involved in cell morphology

YJL074C	SMC3	involved in sister chromatid cohesion

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YKL165C	MCD4	(putative) involved in cell polarity

```
YKR083C		
```

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLR233C	EST1	involved in telomere length regulation

```
YLR234W	TOP3	DNA Topoisomerase III
```
```
YLR376C		
```
```
YLR381W		
```

YMR078C	CTF18	(putative) involved in chromosome transmission during mitosis

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

YPL124W	NIP29	spindle pole body associated protein

```
YPL267W		
```
```
YPR174C		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

-51 to -100 nt upstream of the ATG start codon
6 elements found in 6 genes

YBR073W	RDH54	Putative helicase similar to RAD54

YBR278W	DPB3	C and C' subunits of DNA polymerase II

```
YDR013W		
```

YJL173C	RFA3	subunit 3 of replication factor-A

YLL022C	HIF1	interacts with histone acetyltransferase

YPL241C	CIN2	involved in microtubule function

-1 to -50 nt upstream of the ATG start codon
3 elements found in 3 genes

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL309W	STB1	Interacts with the putative transcription factor Sin3p

```
YNL310C		
```

From Table IVa: Position-dependent pentamers: Clustered pentamers CGCGA and/or TCGCG are found in the upstream regions of these late_g1 yeast genes in the following intervals:

From Table IVa: Position-dependent pentamers: Clustered pentamers
CGCGA and/or TCGCG are found in the upstream regions of these late_g1 yeast genes in the following intervals: