From Table IVb: Position-dependent pentamers: Clustered pentamers

CGCGA
is found in the upstream regions of these late_g1 yeast genes in the following intervals:

-551 to -600 nt upstream of the ATG start codon
2 elements found in 2 genes

• YDL127W	PCL2	G1 cyclin

• YMR199W	CLN1	G(sub)1 cyclin

-501 to -550 nt upstream of the ATG start codon
0 elements found in 0 genes

-451 to -500 nt upstream of the ATG start codon
0 elements found in 0 genes

-401 to -450 nt upstream of the ATG start codon
5 elements found in 5 genes

• YBR073W	RDH54	Putative helicase similar to RAD54

• YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

• YLL002W	KIM2	diepoxybutane and mitomycin C resistance

• YLR326W		

• YML027W	YOX1	Homeobox-domain containing protein

-351 to -400 nt upstream of the ATG start codon
10 elements found in 9 genes

• YDL124W		

• YDL127W	PCL2	G1 cyclin

• YDL227C	HO	Homothallic switching endonuclease

• YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

• YLR121C	YPS4	GPI-anchored aspartic protease

• YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

• YML027W	YOX1	Homeobox-domain containing protein

• YNL300W		

• YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

-301 to -350 nt upstream of the ATG start codon
7 elements found in 7 genes

• YBR070C		involved in osmotolerance

• YHR038W	FIL1	Putative mitochondrial ribosome recycling factor

• YJL187C	SWE1	protein kinase homolog

• YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

• YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

• YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

• YPR175W	DPB2	DNA polymerase epsilon, subunit B

-251 to -300 nt upstream of the ATG start codon
5 elements found in 4 genes

• YGR152C	RSR1	GTP-binding protein, ras superfamily

• YJL187C	SWE1	protein kinase homolog

• YKL042W	SPC42	component of the spindle pole body

• YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

-201 to -250 nt upstream of the ATG start codon
6 elements found in 6 genes

• YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

• YDR507C	GIN4	putative serine/threonine kinase

• YLR183C		

• YLR381W		

• YML027W	YOX1	Homeobox-domain containing protein

• YPR120C	CLB5	B-type cyclin

-151 to -200 nt upstream of the ATG start codon
14 elements found in 11 genes

• YAR003W		beta transducin domain

• YBR070C		involved in osmotolerance

• YDL101C	DUN1	protein kinase

• YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

• YHR153C	SPO16	sporulation protein

• YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

• YKR077W		

• YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

• YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

• YNL309W	STB1	Interacts with the putative transcription factor Sin3p

• YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

-101 to -150 nt upstream of the ATG start codon
15 elements found in 15 genes

• YDL010W		

• YDL164C	CDC9	DNA ligase

• YIL026C	IRR1	involved in cell morphology

• YJL074C	SMC3	involved in sister chromatid cohesion

• YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

• YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

• YKL165C	MCD4	(putative) involved in cell polarity

• YKR083C		

• YLR234W	TOP3	DNA Topoisomerase III

• YLR376C		

• YLR381W		

• YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

• YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

• YPL124W	NIP29	spindle pole body associated protein

• YPR174C		

-51 to -100 nt upstream of the ATG start codon
5 elements found in 5 genes

• YBR073W	RDH54	Putative helicase similar to RAD54

• YBR278W	DPB3	C and C' subunits of DNA polymerase II

• YDR013W		

• YJL173C	RFA3	subunit 3 of replication factor-A

• YPL241C	CIN2	involved in microtubule function

-1 to -50 nt upstream of the ATG start codon
2 elements found in 2 genes

• YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

• YNL309W	STB1	Interacts with the putative transcription factor Sin3p