From Table IVb: Position-dependent pentamers: Clustered pentamers

ATATA
is found in the upstream regions of these early_g1 yeast genes in the following intervals:

-551 to -600 nt upstream of the ATG start codon
7 elements found in 5 genes

• YEL032W	MCM3	component of DNA replication initiator complex

• YHR005C	GPA1	alpha subunit of G protein coupled to mating factor receptors

• YKL150W	MCR1	NADH-cytochrome b5 reductase

• YNR016C	ACC1	acetyl-CoA carboxylase

• YOR066W		

-501 to -550 nt upstream of the ATG start codon
11 elements found in 3 genes

• YCL040W	GLK1	Glucokinase

• YDR368W	YPR1	similar to aldo-keto reductase

• YKL150W	MCR1	NADH-cytochrome b5 reductase

-451 to -500 nt upstream of the ATG start codon
11 elements found in 6 genes

• YBR200W	BEM1	contains two SH3 domains

• YCL040W	GLK1	Glucokinase

• YIL009W	FAA3	Acyl CoA synthase

• YJL194W	CDC6	pre-initiation complex component

• YOR264W		

• YPR002W		

-401 to -450 nt upstream of the ATG start codon
12 elements found in 10 genes

• YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

• YBR054W	YRO2	Homolog to HSP30 heat shock protein YRO1 (S. cerevisiae) 7

• YDL181W	INH1	ATPase inhibitor

• YHR022C		RAS-related protein

• YKL185W	ASH1	probable purine nucleotide-binding protein

• YLR049C		

• YOR065W	CYT1	Cytochrome c1

• YPL158C		

• YPR002W		

• YPR019W	CDC54	Involved in initiation of DNA replication

-351 to -400 nt upstream of the ATG start codon
16 elements found in 10 genes

• YBR053C		

• YBR158W		

• YBR202W	CDC47	MCM3 protein homolog (S. cerevisiae)

• YGR183C	QCR9	7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex

• YLL040C	VPS13	component of peripheral vacuolar membrane protein complex

• YLR049C		

• YNL078W		

• YNR016C	ACC1	acetyl-CoA carboxylase

• YPL158C		

• YPR002W		

-301 to -350 nt upstream of the ATG start codon
15 elements found in 7 genes

• YBR052C		Homolog to YCR004, obr1 (S. pombe), trp repressor binding protein (E. coli)

• YBR054W	YRO2	Homolog to HSP30 heat shock protein YRO1 (S. cerevisiae) 7

• YBR158W		

• YDR033W		

• YGR044C	RME1	zinc finger protein; negative regulator of meiosis; directly repressed by a1-a2 regulator

• YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

• YPL066W		

-251 to -300 nt upstream of the ATG start codon
13 elements found in 7 genes

• YGR281W	YOR1	ABC transporter

• YHL026C		

• YMR256C	COX7	subunit VII of cytochrome c oxidase

• YPL058C	PDR12	multidrug resistance transporter

• YPL066W		

• YPR002W		

• YPR019W	CDC54	Involved in initiation of DNA replication

-201 to -250 nt upstream of the ATG start codon
5 elements found in 5 genes

• YDR511W		

• YGL055W	OLE1	delta-9-fatty acid desaturase

• YIL009W	FAA3	Acyl CoA synthase

• YLR050C		

• YNL046W		

-151 to -200 nt upstream of the ATG start codon
27 elements found in 13 genes

• YBR083W	TEC1	transcription factor of the TEA/ATTS DNA-binding domain family, regulator of Ty1 expression

• YDR511W		

• YGL055W	OLE1	delta-9-fatty acid desaturase

• YGR035C		

• YHL026C		

• YJL157C	FAR1	Cdc28p kinase inhibitor

• YLL040C	VPS13	component of peripheral vacuolar membrane protein complex

• YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

• YMR256C	COX7	subunit VII of cytochrome c oxidase

• YNL046W		

• YNR001C	CIT1	citrate synthase. Nuclear encoded mitochondrial protein.

• YNR067C		

• YPL058C	PDR12	multidrug resistance transporter

-101 to -150 nt upstream of the ATG start codon
25 elements found in 18 genes

• YBR067C	TIP1	cell wall mannoprotein

• YCL040W	GLK1	Glucokinase

• YDR368W	YPR1	similar to aldo-keto reductase

• YER111C	SWI4	transcription factor

• YGR044C	RME1	zinc finger protein; negative regulator of meiosis; directly repressed by a1-a2 regulator

• YHL026C		

• YHR022C		RAS-related protein

• YJL194W	CDC6	pre-initiation complex component

• YKL150W	MCR1	NADH-cytochrome b5 reductase

• YKL163W	PIR3	Protein containing tandem internal repeats

• YLR049C		

• YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

• YMR007W		

• YNR067C		

• YOR264W		

• YPL004C		

• YPL058C	PDR12	multidrug resistance transporter

• YPL158C		

-51 to -100 nt upstream of the ATG start codon
24 elements found in 14 genes

• YBR053C		

• YBR200W	BEM1	contains two SH3 domains

• YBR202W	CDC47	MCM3 protein homolog (S. cerevisiae)

• YDL117W		

• YDL179W	PCL9	Cyclin

• YGR035C		

• YJL194W	CDC6	pre-initiation complex component

• YLR049C		

• YLR274W	CDC46	MCM initiator complex protein

• YMR254C		

• YNL046W		

• YNR016C	ACC1	acetyl-CoA carboxylase

• YOR066W		

• YPR002W		

-1 to -50 nt upstream of the ATG start codon
16 elements found in 14 genes

• YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

• YBR200W	BEM1	contains two SH3 domains

• YDR368W	YPR1	similar to aldo-keto reductase

• YGR281W	YOR1	ABC transporter

• YHR005C	GPA1	alpha subunit of G protein coupled to mating factor receptors

• YJL194W	CDC6	pre-initiation complex component

• YKL150W	MCR1	NADH-cytochrome b5 reductase

• YLR049C		

• YLR050C		

• YLR254C		

• YMR256C	COX7	subunit VII of cytochrome c oxidase

• YNR001C	CIT1	citrate synthase. Nuclear encoded mitochondrial protein.

• YPL066W		

• YPL158C