Positioning of AAACA

From Table IVb: Position-dependent pentamers: Clustered pentamers
AAACA
is found in the upstream regions of these s yeast genes in the following intervals:

-551 to -600 nt upstream of the ATG start codon
6 elements found in 6 genes

YER016W	BIM1	microtubule-binding protein

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YHR172W	SPC97	spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

YLR228C	ECM22	involved in cell wall biogenesis (putative)

-501 to -550 nt upstream of the ATG start codon
5 elements found in 5 genes

```
YBR156C		
```

YER001W	MNN1	Alpha-1,3-mannosyltransferase

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YHR172W	SPC97	spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

-451 to -500 nt upstream of the ATG start codon
7 elements found in 5 genes

```
YDR179C		
```

YER001W	MNN1	Alpha-1,3-mannosyltransferase

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

```
YKL066W		
```

YNL073W	MSK1	mitochondrial lysine-tRNA synthetase

-401 to -450 nt upstream of the ATG start codon
9 elements found in 9 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

```
YBL063W	KIP1	kinesin related protein
```
```
YDR179C		
```
```
YEL017W		
```

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YIL140W	SRO4	localizes to the plasma membrane

```
YLR455W		
```

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

```
YOL019W		
```

-351 to -400 nt upstream of the ATG start codon
10 elements found in 9 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

YCR065W	HCM1	Transcription factor (fork head domain)

```
YDL094C		
```

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

YKR010C	TOF2	topoisomerase I interacting factor 2

```
YLR455W		
```

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

YOR026W	BUB3	cell cycle checkpoint protein

```
YOR284W		
```

-301 to -350 nt upstream of the ATG start codon
12 elements found in 12 genes

```
YBL063W	KIP1	kinesin related protein
```

YBR275C	RIF1	RAP1-interacting factor, involved in establishment of repressed chromatin

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YDL094C		
```
```
YDL096C		
```
```
YDR219C		
```

YIL126W	STH1	helicase related protein, snf2 homolog

YLR045C	STU2	spindle pole body component

```
YLR126C		
```

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

YOR026W	BUB3	cell cycle checkpoint protein

YPL016W	SWI1	Zinc-finger transcription factor

-251 to -300 nt upstream of the ATG start codon
6 elements found in 6 genes

```
YBR007C		
```

YCR065W	HCM1	Transcription factor (fork head domain)

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YIL126W	STH1	helicase related protein, snf2 homolog

```
YLR455W		
```
```
YMR048W		
```

-201 to -250 nt upstream of the ATG start codon
12 elements found in 10 genes

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

YDR252W	BTT1	negative regulator of RNA polymerase II

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

```
YNL176C		
```
```
YOR284W		
```

YPR141C	KAR3	kinesin-like nuclear fusion protein

-151 to -200 nt upstream of the ATG start codon
7 elements found in 7 genes

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

YBL052C	SAS3	involved in silencing at HMR

```
YBR296C	PHO89	Probable Na+/Pi symporter
```
```
YDL094C		
```

YHR172W	SPC97	spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

-101 to -150 nt upstream of the ATG start codon
18 elements found in 11 genes

```
YBR156C		
```

YBR276C	PPS1	dual specificity protein phosphatase

```
YDR113C	PDS1	42-kDa nuclear protein
```
```
YDR219C		
```

YDR356W	NUF1	component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein

YKR010C	TOF2	topoisomerase I interacting factor 2

```
YLL062C		
```

YMR198W	CIK1	spindle pole body associated protein

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

```
YNL176C		
```
```
YOL019W		
```

-51 to -100 nt upstream of the ATG start codon
36 elements found in 21 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

```
YBL063W	KIP1	kinesin related protein
```
```
YBR156C		
```
```
YBR184W		
```

YBR276C	PPS1	dual specificity protein phosphatase

```
YDL094C		
```

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

YDL197C	ASF2	Anti-silencing protein, involved in transcription

```
YDR179C		
```
```
YDR219C		
```

YDR252W	BTT1	negative regulator of RNA polymerase II

YDR488C	PAC11	similar to rat dynein intermediate chain

```
YEL017W		
```

YEL061C	CIN8	kinesin-related protein involved in establishment and maintenance of mitotic spindle

YER016W	BIM1	microtubule-binding protein

```
YER018C	SPC25	component of spindle pole
```
```
YER118C	SSU81	Transmembrane osmosensor
```

YIL126W	STH1	helicase related protein, snf2 homolog

```
YJL115W	ASF1	involved in silencing
```
```
YLL062C		
```

YLR045C	STU2	spindle pole body component

-1 to -50 nt upstream of the ATG start codon
23 elements found in 20 genes

```
YBL063W	KIP1	kinesin related protein
```
```
YBR007C		
```
```
YBR296C	PHO89	Probable Na+/Pi symporter
```
```
YDL094C		
```

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YDR179C		
```

YDR356W	NUF1	component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein

YDR488C	PAC11	similar to rat dynein intermediate chain

YER003C	PMI40	mannose-6-phosphate isomerase

```
YER118C	SSU81	Transmembrane osmosensor
```

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

```
YJL115W	ASF1	involved in silencing
```
```
YJL118W		
```

YJR137C	ECM17	Putative sulfite reductase

YKL067W	YNK1	Nucleoside diphosphate kinase

```
YLL062C		
```
```
YLR126C		
```

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

```
YOL019W		
```

YOR026W	BUB3	cell cycle checkpoint protein

From Table IVb: Position-dependent pentamers: Clustered pentamers AAACA is found in the upstream regions of these s yeast genes in the following intervals:

From Table IVb: Position-dependent pentamers: Clustered pentamers
AAACA
is found in the upstream regions of these s yeast genes in the following intervals: