From Table IIIa: Position-dependent hexamers: Clustered hexamers

ACGCGA and/or TCGCGT are found in the upstream regions of these late_g1 yeast genes in the following intervals:

-551 to -600 nt upstream of the ATG start codon
4 elements found in 4 genes

• YDL127W	PCL2	G1 cyclin

• YGL028C	SCW11	soluble cell wall protein

• YHR113W		Vacuolar aminopeptidase

• YLR381W		

-501 to -550 nt upstream of the ATG start codon
3 elements found in 1 genes

• YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

-451 to -500 nt upstream of the ATG start codon
2 elements found in 1 genes

• YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

-401 to -450 nt upstream of the ATG start codon
5 elements found in 5 genes

• YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

• YLL002W	KIM2	diepoxybutane and mitomycin C resistance

• YLR326W		

• YML027W	YOX1	Homeobox-domain containing protein

• YNL300W		

-351 to -400 nt upstream of the ATG start codon
5 elements found in 4 genes

• YDL127W	PCL2	G1 cyclin

• YGR109C	CLB6	B-type cyclin

• YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

• YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

-301 to -350 nt upstream of the ATG start codon
5 elements found in 5 genes

• YBR071W		

• YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

• YJL187C	SWE1	protein kinase homolog

• YJL196C	ELO1	Elongation enzyme 1

• YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

-251 to -300 nt upstream of the ATG start codon
6 elements found in 4 genes

• YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

• YGR152C	RSR1	GTP-binding protein, ras superfamily

• YJL187C	SWE1	protein kinase homolog

• YMR179W	SPT21	non-specific DNA binding protein

-201 to -250 nt upstream of the ATG start codon
6 elements found in 6 genes

• YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

• YDL018C	ERP3	p24 protein involved in membrane trafficking

• YLR183C		

• YLR381W		

• YML027W	YOX1	Homeobox-domain containing protein

• YMR179W	SPT21	non-specific DNA binding protein

-151 to -200 nt upstream of the ATG start codon
15 elements found in 13 genes

• YAR003W		beta transducin domain

• YBR070C		involved in osmotolerance

• YCL024W		Ser/Thr protein kinase

• YDL101C	DUN1	protein kinase

• YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

• YHR153C	SPO16	sporulation protein

• YKR077W		

• YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

• YLR383W	RHC18	involved in recombination repair

• YNL102W	POL1	DNA polymerase I alpha subunit, p180

• YNL309W	STB1	Interacts with the putative transcription factor Sin3p

• YPL127C	HHO1	histone H1

• YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

-101 to -150 nt upstream of the ATG start codon
24 elements found in 24 genes

• YBR073W	RDH54	Putative helicase similar to RAD54

• YDL164C	CDC9	DNA ligase

• YGL027C	CWH41	glucosidase I

• YHR110W	ERP5	p24 protein involved in membrane trafficking

• YHR154W	ESC4	involved in silencing

• YIL026C	IRR1	involved in cell morphology

• YJL074C	SMC3	involved in sister chromatid cohesion

• YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

• YKL045W	PRI2	p58 polypeptide of DNA primase

• YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

• YKL165C	MCD4	(putative) involved in cell polarity

• YKR083C		

• YLL002W	KIM2	diepoxybutane and mitomycin C resistance

• YLR233C	EST1	involved in telomere length regulation

• YLR234W	TOP3	DNA Topoisomerase III

• YLR376C		

• YLR381W		

• YMR078C	CTF18	(putative) involved in chromosome transmission during mitosis

• YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

• YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

• YPL124W	NIP29	spindle pole body associated protein

• YPL267W		

• YPR174C		

• YPR175W	DPB2	DNA polymerase epsilon, subunit B

-51 to -100 nt upstream of the ATG start codon
6 elements found in 6 genes

• YBR073W	RDH54	Putative helicase similar to RAD54

• YBR278W	DPB3	C and C' subunits of DNA polymerase II

• YDR013W		

• YJL173C	RFA3	subunit 3 of replication factor-A

• YLL022C	HIF1	interacts with histone acetyltransferase

• YPL241C	CIN2	involved in microtubule function

-1 to -50 nt upstream of the ATG start codon
3 elements found in 3 genes

• YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

• YNL309W	STB1	Interacts with the putative transcription factor Sin3p

• YNL310C