Position dependent TCGCG

From Table IIb: Position-dependent, orientation-dependent pentamers
TCGCG
is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 2 genes

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YLR254C		
```

early_g1: -499 to -401 nt upstream of the ATG start codon: 1 genes

YLR273C	PIG1	Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit

early_g1: -400 to -302 nt upstream of the ATG start codon: 1 genes

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

early_g1: -301 to -203 nt upstream of the ATG start codon: 6 genes

YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

```
YDL181W	INH1	ATPase inhibitor
```

YLL040C	VPS13	component of peripheral vacuolar membrane protein complex

```
YLR049C		
```
```
YOR264W		
```
```
YPR002W		
```

early_g1: -202 to -104 nt upstream of the ATG start codon: 2 genes

YLR079W	SIC1	Cdc28p-Clb5 protein kinase inhibitor

YLR274W	CDC46	MCM initiator complex protein

early_g1: -103 to -5 nt upstream of the ATG start codon: 0 genes

late_g1: -598 to -500 nt upstream of the ATG start codon: 6 genes

```
YGL028C	SCW11	soluble cell wall protein
```
```
YHR113W		Vacuolar aminopeptidase
```

YKL045W	PRI2	p58 polypeptide of DNA primase

```
YLR381W		
```
```
YMR199W	CLN1	G(sub)1 cyclin
```

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

late_g1: -499 to -401 nt upstream of the ATG start codon: 4 genes

YBR073W	RDH54	Putative helicase similar to RAD54

```
YDL119C		
```

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

```
YLR381W		
```

late_g1: -400 to -302 nt upstream of the ATG start codon: 15 genes

```
YBR071W		
```

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

```
YDL127W	PCL2	G1 cyclin
```

YDL227C	HO	Homothallic switching endonuclease

YDR297W	SUR2	Syringomycin response protein 2

```
YGR109C	CLB6	B-type cyclin
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

```
YLR376C		
```

YLR383W	RHC18	involved in recombination repair

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

```
YPL014W		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

late_g1: -301 to -203 nt upstream of the ATG start codon: 11 genes

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

YDL018C	ERP3	p24 protein involved in membrane trafficking

YDL227C	HO	Homothallic switching endonuclease

YDR507C	GIN4	putative serine/threonine kinase

YGR152C	RSR1	GTP-binding protein, ras superfamily

YKL042W	SPC42	component of the spindle pole body

YLR121C	YPS4	GPI-anchored aspartic protease

```
YLR326W		
```

YMR179W	SPT21	non-specific DNA binding protein

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

late_g1: -202 to -104 nt upstream of the ATG start codon: 23 genes

```
YBR071W		
```

YBR073W	RDH54	Putative helicase similar to RAD54

```
YCL024W		Ser/Thr protein kinase
```
```
YDL010W		
```

YHR110W	ERP5	p24 protein involved in membrane trafficking

```
YHR154W	ESC4	involved in silencing
```
```
YJL181W		
```

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLR121C	YPS4	GPI-anchored aspartic protease

YLR233C	EST1	involved in telomere length regulation

YLR383W	RHC18	involved in recombination repair

YMR078C	CTF18	(putative) involved in chromosome transmission during mitosis

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

YPL124W	NIP29	spindle pole body associated protein

```
YPL127C	HHO1	histone H1
```
```
YPL267W		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

late_g1: -103 to -5 nt upstream of the ATG start codon: 3 genes

```
YGL027C	CWH41	glucosidase I
```

YLL022C	HIF1	interacts with histone acetyltransferase

```
YNL310C		
```

s: -598 to -500 nt upstream of the ATG start codon: 5 genes

YBR275C	RIF1	RAP1-interacting factor, involved in establishment of repressed chromatin

```
YBR296C	PHO89	Probable Na+/Pi symporter
```

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

YER003C	PMI40	mannose-6-phosphate isomerase

YER017C	AFG3	ATP-dependent metalloprotease

s: -499 to -401 nt upstream of the ATG start codon: 4 genes

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

YER001W	MNN1	Alpha-1,3-mannosyltransferase

```
YER019W		
```
```
YOL019W		
```

s: -400 to -302 nt upstream of the ATG start codon: 7 genes

YER003C	PMI40	mannose-6-phosphate isomerase

YER017C	AFG3	ATP-dependent metalloprotease

```
YER118C	SSU81	Transmembrane osmosensor
```

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YIL140W	SRO4	localizes to the plasma membrane

YLR045C	STU2	spindle pole body component

```
YOL019W		
```

s: -301 to -203 nt upstream of the ATG start codon: 5 genes

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

```
YDL094C		
```

YER017C	AFG3	ATP-dependent metalloprotease

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

s: -202 to -104 nt upstream of the ATG start codon: 10 genes

```
YBR156C		
```

YBR276C	PPS1	dual specificity protein phosphatase

```
YDR179C		
```

YER003C	PMI40	mannose-6-phosphate isomerase

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YHR172W	SPC97	spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

```
YLR151C		
```

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

YPL016W	SWI1	Zinc-finger transcription factor

s: -103 to -5 nt upstream of the ATG start codon: 4 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

```
YBL063W	KIP1	kinesin related protein
```

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YOR026W	BUB3	cell cycle checkpoint protein

g2: -598 to -500 nt upstream of the ATG start codon: 0 genes

g2: -499 to -401 nt upstream of the ATG start codon: 1 genes

YKL049C	CSE4	high similarity to histone H3 and to human centromere protein CENP-A

g2: -400 to -302 nt upstream of the ATG start codon: 1 genes

YDR389W	SAC7	GTPase activating protein (GAP) for RHO1

g2: -301 to -203 nt upstream of the ATG start codon: 4 genes

YBL097W	BRN1	involved in chromosome maintenance; similar to Drosophila barren, Xenopus XCAP-H, and human BRRN1

YBR104W	YMC2	mitochondrial carrier protein

```
YIL050W	PCL7	PHO85 cyclin
```
```
YNR009W		
```

g2: -202 to -104 nt upstream of the ATG start codon: 5 genes

YBR104W	YMC2	mitochondrial carrier protein

```
YCL063W		
```
```
YCR073C	SSK22	protein kinase
```
```
YLR015W		
```
```
YMR215W		
```

g2: -103 to -5 nt upstream of the ATG start codon: 1 genes

```
YBL032W		
```

m: -598 to -500 nt upstream of the ATG start codon: 1 genes

YJR092W	BUD4	involved in bud site selection

m: -499 to -401 nt upstream of the ATG start codon: 1 genes

YGR279C	SCW4	soluble cell wall protein; can be released from SDS-extracted cell walls under reducing conditions

m: -400 to -302 nt upstream of the ATG start codon: 4 genes

YGL201C	MCM6	component of MCM initiator complex involved in DNA replication

```
YKL129C	MYO3	myosin I
```
```
YML033W		
```
```
YOL014W		
```

m: -301 to -203 nt upstream of the ATG start codon: 3 genes

YJR092W	BUD4	involved in bud site selection

YLR353W	BUD8	involved in bud site selection

YPL242C	IQG1	Similar to mammalian IQGAP proteins

m: -202 to -104 nt upstream of the ATG start codon: 2 genes

YJL079C	PRY1	Similar to plant PR-1 class of pathogen related proteins

```
YLR190W		
```

m: -103 to -5 nt upstream of the ATG start codon: 0 genes

From Table IIb: Position-dependent, orientation-dependent pentamers TCGCG is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIb: Position-dependent, orientation-dependent pentamers
TCGCG
is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: