Position dependent TATAA

From Table IIb: Position-dependent, orientation-dependent pentamers
TATAA
is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 6 genes

YDR368W	YPR1	similar to aldo-keto reductase

YGR044C	RME1	zinc finger protein; negative regulator of meiosis; directly repressed by a1-a2 regulator

```
YLR050C		
```
```
YNR016C	ACC1	acetyl-CoA carboxylase
```
```
YNR067C		
```
```
YOR065W	CYT1	Cytochrome c1
```

early_g1: -499 to -401 nt upstream of the ATG start codon: 13 genes

YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

YBR054W	YRO2	Homolog to HSP30 heat shock protein YRO1 (S. cerevisiae) 7

```
YBR067C	TIP1	cell wall mannoprotein
```
```
YBR200W	BEM1	contains two SH3 domains
```
```
YDR033W		
```
```
YJL157C	FAR1	Cdc28p kinase inhibitor
```

YKL185W	ASH1	probable purine nucleotide-binding protein

YLR274W	CDC46	MCM initiator complex protein

YML110C	COQ5	Putative mitochondrial C-methyltransferase

```
YOR065W	CYT1	Cytochrome c1
```
```
YOR264W		
```
```
YPL158C		
```
```
YPR002W		
```

early_g1: -400 to -302 nt upstream of the ATG start codon: 13 genes

```
YBR053C		
```

YBR054W	YRO2	Homolog to HSP30 heat shock protein YRO1 (S. cerevisiae) 7

```
YBR158W		
```
```
YBR200W	BEM1	contains two SH3 domains
```

YBR202W	CDC47	MCM3 protein homolog (S. cerevisiae)

```
YDR033W		
```

YDR368W	YPR1	similar to aldo-keto reductase

YGR183C	QCR9	7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex

```
YLR254C		
```

YLR395C	COX8	Cytochrome-c oxidase chain VIII

```
YNL046W		
```
```
YNR016C	ACC1	acetyl-CoA carboxylase
```
```
YPL066W		
```

early_g1: -301 to -203 nt upstream of the ATG start codon: 13 genes

```
YBR053C		
```

YBR202W	CDC47	MCM3 protein homolog (S. cerevisiae)

```
YCL040W	GLK1	Glucokinase
```
```
YDL117W		
```
```
YDL179W	PCL9	Cyclin
```
```
YDR511W		
```
```
YHL026C		
```

YKL150W	MCR1	NADH-cytochrome b5 reductase

```
YML109W	ZDS2	Zds1 homolog
```

YMR256C	COX7	subunit VII of cytochrome c oxidase

YPL058C	PDR12	multidrug resistance transporter

```
YPL066W		
```

YPR019W	CDC54	Involved in initiation of DNA replication

early_g1: -202 to -104 nt upstream of the ATG start codon: 24 genes

YBR052C		Homolog to YCR004, obr1 (S. pombe), trp repressor binding protein (E. coli)

```
YBR067C	TIP1	cell wall mannoprotein
```

YBR083W	TEC1	transcription factor of the TEA/ATTS DNA-binding domain family, regulator of Ty1 expression

```
YBR157C		
```
```
YCL040W	GLK1	Glucokinase
```
```
YDL117W		
```
```
YGR035C		
```
```
YGR281W	YOR1	ABC transporter
```
```
YHR022C		RAS-related protein
```
```
YJL157C	FAR1	Cdc28p kinase inhibitor
```

YJL194W	CDC6	pre-initiation complex component

YKL150W	MCR1	NADH-cytochrome b5 reductase

YKL163W	PIR3	Protein containing tandem internal repeats

YLL040C	VPS13	component of peripheral vacuolar membrane protein complex

YLR079W	SIC1	Cdc28p-Clb5 protein kinase inhibitor

YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

```
YMR007W		
```

YNR001C	CIT1	citrate synthase. Nuclear encoded mitochondrial protein.

```
YNR067C		
```
```
YOR264W		
```
```
YPL004C		
```

YPL058C	PDR12	multidrug resistance transporter

```
YPL066W		
```
```
YPR002W		
```

early_g1: -103 to -5 nt upstream of the ATG start codon: 28 genes

YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

YBR052C		Homolog to YCR004, obr1 (S. pombe), trp repressor binding protein (E. coli)

```
YBR067C	TIP1	cell wall mannoprotein
```
```
YBR200W	BEM1	contains two SH3 domains
```

YBR202W	CDC47	MCM3 protein homolog (S. cerevisiae)

```
YBR231C		
```
```
YDL117W		
```

YDR368W	YPR1	similar to aldo-keto reductase

YEL032W	MCM3	component of DNA replication initiator complex

YGL055W	OLE1	delta-9-fatty acid desaturase

```
YGR035C		
```

YGR044C	RME1	zinc finger protein; negative regulator of meiosis; directly repressed by a1-a2 regulator

YHR005C	GPA1	alpha subunit of G protein coupled to mating factor receptors

YKL150W	MCR1	NADH-cytochrome b5 reductase

YKL163W	PIR3	Protein containing tandem internal repeats

```
YLR049C		
```
```
YLR050C		
```

YLR273C	PIG1	Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit

YLR395C	COX8	Cytochrome-c oxidase chain VIII

YML110C	COQ5	Putative mitochondrial C-methyltransferase

YMR256C	COX7	subunit VII of cytochrome c oxidase

```
YNL046W		
```

YNR001C	CIT1	citrate synthase. Nuclear encoded mitochondrial protein.

```
YNR016C	ACC1	acetyl-CoA carboxylase
```
```
YOR065W	CYT1	Cytochrome c1
```
```
YOR264W		
```
```
YPL066W		
```
```
YPR002W		
```

late_g1: -598 to -500 nt upstream of the ATG start codon: 18 genes

```
YCL024W		Ser/Thr protein kinase
```

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YHR153C	SPO16	sporulation protein
```

YIL159W	BNR1	involved in actin filament organization

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

YKL042W	SPC42	component of the spindle pole body

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

```
YLR376C		
```
```
YLR457C	NBP1	Nap1p binding protein
```

YNL173C	MDG1	Involved in G-protein mediated signal transduction

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

```
YPL127C	HHO1	histone H1
```
```
YPR174C		
```
```
YLR349W		
```

late_g1: -499 to -401 nt upstream of the ATG start codon: 19 genes

YBR252W	DUT1	dUTP pyrophosphatase (dUTPase)

```
YCL024W		Ser/Thr protein kinase
```

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

```
YDR383C		
```
```
YHR153C	SPO16	sporulation protein
```
```
YJL181W		
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YKL042W	SPC42	component of the spindle pole body

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

```
YNL303W		
```
```
YNL310C		
```
```
YPL256C	CLN2	G(sub)1 cyclin
```
```
YPL267W		
```

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

late_g1: -400 to -302 nt upstream of the ATG start codon: 27 genes

```
YAR003W		beta transducin domain
```
```
YBR070C		involved in osmotolerance
```
```
YBR089W		
```

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL101C	DUN1	protein kinase
```
```
YDR383C		
```

YGR041W	BUD9	involved in bud-site selection

```
YHR039C		Aldehyde dehydrogenases
```

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

```
YLR286C	CTS1	Endochitinase
```
```
YLR326W		
```

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

```
YML021C	UNG1	uracil DNA glycosylase
```

YML060W	OGG1	43-kDa 8-oxo-guanine DNA glycosylase

```
YML061C	PIF1	5' to 3' DNA helicase
```

YML102W	CAC2	p60 subunit of the yeast omatin Assembly Factor-I (CAF-I)

YMR179W	SPT21	non-specific DNA binding protein

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

```
YNL262W	POL2	DNA polymerase II
```

YNL272C	SEC2	GDP/GTP exchange factor for Sec4p

```
YNL303W		
```
```
YOL017W		
```

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

```
YPL209C	IPL1	Protein kinase
```

late_g1: -301 to -203 nt upstream of the ATG start codon: 30 genes

YBR073W	RDH54	Putative helicase similar to RAD54

```
YCL022C		
```
```
YDL101C	DUN1	protein kinase
```

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YDR383C		
```
```
YGL027C	CWH41	glucosidase I
```
```
YHR039C		Aldehyde dehydrogenases
```
```
YHR113W		Vacuolar aminopeptidase
```

YJL074C	SMC3	involved in sister chromatid cohesion

```
YJL181W		
```

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

```
YKR077W		
```

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLR233C	EST1	involved in telomere length regulation

```
YLR286C	CTS1	Endochitinase
```

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

```
YML021C	UNG1	uracil DNA glycosylase
```

YMR179W	SPT21	non-specific DNA binding protein

```
YMR199W	CLN1	G(sub)1 cyclin
```

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL102W	POL1	DNA polymerase I alpha subunit, p180

```
YNL262W	POL2	DNA polymerase II
```

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

```
YOR144C		
```

YOR316C	COT1	involved in cobalt accumulation

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

```
YPL209C	IPL1	Protein kinase
```

YPL241C	CIN2	involved in microtubule function

```
YPL256C	CLN2	G(sub)1 cyclin
```
```
YLR236C		
```

late_g1: -202 to -104 nt upstream of the ATG start codon: 35 genes

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

```
YBR071W		
```

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

```
YDL127W	PCL2	G1 cyclin
```
```
YDL156W		
```

YDR297W	SUR2	Syringomycin response protein 2

```
YER070W	RNR1	ribonucleotide reductase
```
```
YGL028C	SCW11	soluble cell wall protein
```
```
YGL089C	MF(ALPHA)2	alpha mating factor
```
```
YGR109C	CLB6	B-type cyclin
```
```
YHR039C		Aldehyde dehydrogenases
```

YHR110W	ERP5	p24 protein involved in membrane trafficking

```
YJL018W		
```

YJL173C	RFA3	subunit 3 of replication factor-A

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLR121C	YPS4	GPI-anchored aspartic protease

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

```
YLR381W		
```
```
YML021C	UNG1	uracil DNA glycosylase
```
```
YML061C	PIF1	5' to 3' DNA helicase
```

YMR179W	SPT21	non-specific DNA binding protein

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

```
YNL300W		
```

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

```
YOL017W		
```

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

```
YPL187W	MF(ALPHA)1	mating factor alpha
```
```
YPL209C	IPL1	Protein kinase
```

YPL241C	CIN2	involved in microtubule function

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

late_g1: -103 to -5 nt upstream of the ATG start codon: 31 genes

```
YAR003W		beta transducin domain
```

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

YBR073W	RDH54	Putative helicase similar to RAD54

YBR252W	DUT1	dUTP pyrophosphatase (dUTPase)

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YDL127W	PCL2	G1 cyclin
```
```
YDR013W		
```
```
YDR383C		
```
```
YDR493W		
```

YFL008W	SMC1	omosome segregation protein

```
YGL028C	SCW11	soluble cell wall protein
```
```
YGL089C	MF(ALPHA)2	alpha mating factor
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

```
YHR039C		Aldehyde dehydrogenases
```

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YJL173C	RFA3	subunit 3 of replication factor-A

```
YJL196C	ELO1	Elongation enzyme 1
```

YKL042W	SPC42	component of the spindle pole body

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

```
YLR286C	CTS1	Endochitinase
```

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL173C	MDG1	Involved in G-protein mediated signal transduction

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

```
YPL014W		
```

YPL124W	NIP29	spindle pole body associated protein

```
YPL127C	HHO1	histone H1
```
```
YPL187W	MF(ALPHA)1	mating factor alpha
```

YPL241C	CIN2	involved in microtubule function

```
YPL267W		
```

s: -598 to -500 nt upstream of the ATG start codon: 9 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

YBR275C	RIF1	RAP1-interacting factor, involved in establishment of repressed chromatin

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YEL018W		
```

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

```
YJL118W		
```

YJR137C	ECM17	Putative sulfite reductase

YPR141C	KAR3	kinesin-like nuclear fusion protein

s: -499 to -401 nt upstream of the ATG start codon: 9 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

```
YBL063W	KIP1	kinesin related protein
```

YBR275C	RIF1	RAP1-interacting factor, involved in establishment of repressed chromatin

YER003C	PMI40	mannose-6-phosphate isomerase

YIL140W	SRO4	localizes to the plasma membrane

```
YJL118W		
```

YJR137C	ECM17	Putative sulfite reductase

YKL067W	YNK1	Nucleoside diphosphate kinase

s: -400 to -302 nt upstream of the ATG start codon: 13 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

YDR252W	BTT1	negative regulator of RNA polymerase II

YER016W	BIM1	microtubule-binding protein

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YIL140W	SRO4	localizes to the plasma membrane

YJR137C	ECM17	Putative sulfite reductase

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

```
YLR126C		
```
```
YNL176C		
```

s: -301 to -203 nt upstream of the ATG start codon: 12 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

```
YBR156C		
```

YBR275C	RIF1	RAP1-interacting factor, involved in establishment of repressed chromatin

```
YDL094C		
```

YDL197C	ASF2	Anti-silencing protein, involved in transcription

```
YDR179C		
```
```
YDR219C		
```
```
YER118C	SSU81	Transmembrane osmosensor
```
```
YJL118W		
```

YKR010C	TOF2	topoisomerase I interacting factor 2

YMR190C	SGS1	has DNA helicase signature motifs

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

s: -202 to -104 nt upstream of the ATG start codon: 21 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

YBL052C	SAS3	involved in silencing at HMR

```
YBR296C	PHO89	Probable Na+/Pi symporter
```

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

```
YDL094C		
```

YDR356W	NUF1	component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein

YDR488C	PAC11	similar to rat dynein intermediate chain

YER001W	MNN1	Alpha-1,3-mannosyltransferase

YER017C	AFG3	ATP-dependent metalloprotease

```
YFR038W		
```

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YJR137C	ECM17	Putative sulfite reductase

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

YKL067W	YNK1	Nucleoside diphosphate kinase

```
YLR126C		
```
```
YMR048W		
```

YMR198W	CIK1	spindle pole body associated protein

```
YOL019W		
```

YPR141C	KAR3	kinesin-like nuclear fusion protein

s: -103 to -5 nt upstream of the ATG start codon: 19 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

YBL052C	SAS3	involved in silencing at HMR

```
YBR296C	PHO89	Probable Na+/Pi symporter
```

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

```
YEL017W		
```

YER003C	PMI40	mannose-6-phosphate isomerase

YER017C	AFG3	ATP-dependent metalloprotease

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YIR017C	MET28	transcriptional activator in the Cbf1p-Met4p-Met28p complex

YJR006W	HYS2	DNA polymerase delta 55 KD subunit

YKR010C	TOF2	topoisomerase I interacting factor 2

```
YLR151C		
```

YMR198W	CIK1	spindle pole body associated protein

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

YNL073W	MSK1	mitochondrial lysine-tRNA synthetase

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

```
YOL019W		
```

YPL016W	SWI1	Zinc-finger transcription factor

g2: -598 to -500 nt upstream of the ATG start codon: 12 genes

YBL097W	BRN1	involved in chromosome maintenance; similar to Drosophila barren, Xenopus XCAP-H, and human BRRN1

```
YBR043C		
```

YCL014W	BUD3	involved in bud site selection

YCR084C	TUP1	glucose repression regulatory protein, exhibits similarity to beta subunits of G proteins

YDR389W	SAC7	GTPase activating protein (GAP) for RHO1

```
YDR451C		
```

YER069W	ARG5,6	N-acetyl-gamma-glutamyl-phosphate reductase and acetylglutamate kinase

YIL106W	MOB1	(putative) transcriptional regulator involved in mitosis

```
YIL131C	FKH1	
```
```
YKL052C		
```
```
YLL047W		
```
```
YOR073W		
```

g2: -499 to -401 nt upstream of the ATG start codon: 9 genes

```
YCL012W		
```
```
YCL012W		
```

YCR084C	TUP1	glucose repression regulatory protein, exhibits similarity to beta subunits of G proteins

YDR464W	SPP41	negative regulator of prp genes

```
YIL131C	FKH1	
```

YJR076C	CDC11	Component of 10 nm filaments of mother-bud neck

YJR112W	NNF1	involved in nuclear function

```
YKL053W		
```
```
YMR299C		
```

g2: -400 to -302 nt upstream of the ATG start codon: 19 genes

```
YBR038W	CHS2	chitin synthase 2
```

YBR104W	YMC2	mitochondrial carrier protein

```
YCL012W		
```
```
YCL012W		
```

YCL014W	BUD3	involved in bud site selection

```
YCL063W		
```

YDL198C	YHM1	(putative) mitochondrial carrier protein

```
YDR366C		
```
```
YDR451C		
```

YDR464W	SPP41	negative regulator of prp genes

```
YIL050W	PCL7	PHO85 cyclin
```

YIL169C		serine-, threonine-rich protein

YJL137C	GLG2	glycogen synthesis initiator

YKL049C	CSE4	high similarity to histone H3 and to human centromere protein CENP-A

```
YKL069W		
```
```
YLL046C	RNP1	ribonucleoprotein 1
```
```
YLL047W		
```

YOR274W	MOD5	transfer RNA isopentenyl transferase

YPR111W	DBF20	kinase required for late nuclear division

g2: -301 to -203 nt upstream of the ATG start codon: 16 genes

YBL097W	BRN1	involved in chromosome maintenance; similar to Drosophila barren, Xenopus XCAP-H, and human BRRN1

```
YBR038W	CHS2	chitin synthase 2
```

YCL014W	BUD3	involved in bud site selection

YIL106W	MOB1	(putative) transcriptional regulator involved in mitosis

```
YIL131C	FKH1	
```
```
YIL158W		
```

YJL099W	CHS6	involved in chitin biosynthesis

YJR112W	NNF1	involved in nuclear function

YKL049C	CSE4	high similarity to histone H3 and to human centromere protein CENP-A

```
YKL053W		
```
```
YLL047W		
```

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

```
YMR003W		
```

YOR274W	MOD5	transfer RNA isopentenyl transferase

YPR111W	DBF20	kinase required for late nuclear division

```
YMR299C		
```

g2: -202 to -104 nt upstream of the ATG start codon: 14 genes

```
YBL032W		
```

YBR104W	YMC2	mitochondrial carrier protein

```
YDR324C		
```
```
YDR451C		
```

YDR464W	SPP41	negative regulator of prp genes

YER069W	ARG5,6	N-acetyl-gamma-glutamyl-phosphate reductase and acetylglutamate kinase

YGL255W	ZRT1	high-affinity zinc transport protein

YIL169C		serine-, threonine-rich protein

YJL137C	GLG2	glycogen synthesis initiator

```
YJR110W		
```
```
YKL048C	ELM1	protein kinase
```
```
YKL053W		
```
```
YLL046C	RNP1	ribonucleoprotein 1
```

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

g2: -103 to -5 nt upstream of the ATG start codon: 9 genes

YBL097W	BRN1	involved in chromosome maintenance; similar to Drosophila barren, Xenopus XCAP-H, and human BRRN1

```
YCR073C	SSK22	protein kinase
```

YDL198C	YHM1	(putative) mitochondrial carrier protein

```
YDR451C		
```
```
YGL101W		
```

YIL106W	MOB1	(putative) transcriptional regulator involved in mitosis

```
YMR215W		
```

YOR188W	MSB1	involved in polarized growth

YPL116W	HOS3	sequence similar to the histone deacetylase Hda1p

m: -598 to -500 nt upstream of the ATG start codon: 10 genes

```
YCL038C		Membrane transporter
```

YCR042C	TSM1	TATA binding protein-associated factor (TAF)

YHR152W	SPO12	20 kDa protein with negatively charged C-terminus required for function; thought to be a positive regulator of exit from M-phase in mitosis and meiosis. Spo12p interacts with Dbf2p and Dbf20p protein kinases.

YIL162W	SUC2	invertase (sucrose hydrolyzing enzyme)

```
YLR190W		
```
```
YML034W		
```
```
YNL058C		
```
```
YOL137W		
```

YPL242C	IQG1	Similar to mammalian IQGAP proteins

YPR119W	CLB2	G(sub)2-specific B-type cyclin

m: -499 to -401 nt upstream of the ATG start codon: 9 genes

YAL022C	FUN26	predicted membrane protein

```
YAL040C	CLN3	G(sub)1 cyclin
```

YCR042C	TSM1	TATA binding protein-associated factor (TAF)

```
YIL161W		
```
```
YIL167W		
```
```
YKL129C	MYO3	myosin I
```
```
YPL186C		
```

YPR119W	CLB2	G(sub)2-specific B-type cyclin

```
YPR157W		
```

m: -400 to -302 nt upstream of the ATG start codon: 5 genes

YAL022C	FUN26	predicted membrane protein

YLR353W	BUD8	involved in bud site selection

```
YNL057W		
```
```
YOL014W		
```

YOR058C	ASE1	encodes component of the spindle midzone

m: -301 to -203 nt upstream of the ATG start codon: 13 genes

YAL022C	FUN26	predicted membrane protein

```
YBR138C	HDR1	Unknown
```
```
YCL038C		Membrane transporter
```
```
YDR146C	SWI5	transcriptional activator
```

YGR279C	SCW4	soluble cell wall protein; can be released from SDS-extracted cell walls under reducing conditions

```
YIL161W		
```

YJL079C	PRY1	Similar to plant PR-1 class of pathogen related proteins

```
YKL129C	MYO3	myosin I
```
```
YKR021W		
```
```
YML034W		
```
```
YNL057W		
```
```
YOL070C		
```

YPR119W	CLB2	G(sub)2-specific B-type cyclin

m: -202 to -104 nt upstream of the ATG start codon: 11 genes

YAL022C	FUN26	predicted membrane protein

```
YDL138W	RGT2	glucose permease
```
```
YDR146C	SWI5	transcriptional activator
```

YGL021W	ALK1	DNA damage-responsive protein

```
YKL129C	MYO3	myosin I
```

YLR131C	ACE2	zinc finger transcription factor

YLR353W	BUD8	involved in bud site selection

YMR001C	CDC5	protein kinase which functions at the G(sub)2/M boundary

```
YNL058C		
```

YPR119W	CLB2	G(sub)2-specific B-type cyclin

```
YPR157W		
```

m: -103 to -5 nt upstream of the ATG start codon: 17 genes

```
YAR018C	KIN3	protein kinase
```
```
YCL038C		Membrane transporter
```
```
YDR146C	SWI5	transcriptional activator
```

YGR143W	SKN1	encodes a predicted type II membrane protein highly homologous to Kre6p

YJR092W	BUD4	involved in bud site selection

```
YKL129C	MYO3	myosin I
```

YMR032W	HOF1	SH3 domain containing-protein

YNL053W	MSG5	Dual-specificity protein tyrosine phosphatase

```
YNL057W		
```
```
YNL058C		
```
```
YOL070C		
```
```
YOL137W		
```

YOR025W	HST3	involved in telomeric silencing

```
YOR229W	WTM2	Transcriptional modulator
```
```
YOR315W		
```

YPR119W	CLB2	G(sub)2-specific B-type cyclin

YPR167C	MET16	3'phosphoadenylylsulfate reductase

From Table IIb: Position-dependent, orientation-dependent pentamers TATAA is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIb: Position-dependent, orientation-dependent pentamers
TATAA
is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: