Position dependent GGCCA

From Table IIa: Position-dependent, orientation-independent pentamers
GGCCA and/or TGGCC
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 5 genes

YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

YKL185W	ASH1	probable purine nucleotide-binding protein

```
YNL046W		
```
```
YOR066W		
```
```
YPL066W		
```

early_g1: -499 to -401 nt upstream of the ATG start codon: 12 genes

```
YBR231C		
```
```
YDL117W		
```
```
YDL179W	PCL9	Cyclin
```
```
YDL181W	INH1	ATPase inhibitor
```

YGR044C	RME1	zinc finger protein; negative regulator of meiosis; directly repressed by a1-a2 regulator

```
YIL009W	FAA3	Acyl CoA synthase
```

YLR079W	SIC1	Cdc28p-Clb5 protein kinase inhibitor

YML110C	COQ5	Putative mitochondrial C-methyltransferase

```
YNR067C		
```
```
YOR065W	CYT1	Cytochrome c1
```
```
YOR264W		
```
```
YPL004C		
```

early_g1: -400 to -302 nt upstream of the ATG start codon: 9 genes

```
YBR067C	TIP1	cell wall mannoprotein
```
```
YDL179W	PCL9	Cyclin
```
```
YDL181W	INH1	ATPase inhibitor
```

YEL032W	MCM3	component of DNA replication initiator complex

YGR044C	RME1	zinc finger protein; negative regulator of meiosis; directly repressed by a1-a2 regulator

```
YIL009W	FAA3	Acyl CoA synthase
```

YKL163W	PIR3	Protein containing tandem internal repeats

```
YOR065W	CYT1	Cytochrome c1
```
```
YPL004C		
```

early_g1: -301 to -203 nt upstream of the ATG start codon: 4 genes

```
YDL117W		
```

YGR044C	RME1	zinc finger protein; negative regulator of meiosis; directly repressed by a1-a2 regulator

YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

```
YML109W	ZDS2	Zds1 homolog
```

early_g1: -202 to -104 nt upstream of the ATG start codon: 0 genes

early_g1: -103 to -5 nt upstream of the ATG start codon: 0 genes

late_g1: -598 to -500 nt upstream of the ATG start codon: 17 genes

```
YBR070C		involved in osmotolerance
```

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YDL119C		
```
```
YER070W	RNR1	ribonucleotide reductase
```

YFL008W	SMC1	omosome segregation protein

```
YGL027C	CWH41	glucosidase I
```
```
YGL028C	SCW11	soluble cell wall protein
```

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

```
YKR077W		
```

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR121C	YPS4	GPI-anchored aspartic protease

```
YLR376C		
```

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

```
YPL014W		
```
```
YLR236C		
```

late_g1: -499 to -401 nt upstream of the ATG start codon: 10 genes

```
YDL127W	PCL2	G1 cyclin
```

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

YLR121C	YPS4	GPI-anchored aspartic protease

```
YLR376C		
```
```
YML061C	PIF1	5' to 3' DNA helicase
```
```
YNL262W	POL2	DNA polymerase II
```

YOR316C	COT1	involved in cobalt accumulation

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

```
YPL256C	CLN2	G(sub)1 cyclin
```

late_g1: -400 to -302 nt upstream of the ATG start codon: 15 genes

YBR278W	DPB3	C and C' subunits of DNA polymerase II

```
YDL124W		
```
```
YDR013W		
```

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YDR383C		
```
```
YHR113W		Vacuolar aminopeptidase
```

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YLR121C	YPS4	GPI-anchored aspartic protease

YML060W	OGG1	43-kDa 8-oxo-guanine DNA glycosylase

```
YOR074C	CDC21	Thymidylate synthase
```

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

```
YPL267W		
```
```
YPR174C		
```
```
YLR349W		
```

late_g1: -301 to -203 nt upstream of the ATG start codon: 13 genes

YDR507C	GIN4	putative serine/threonine kinase

```
YJL018W		
```

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YKL108W	SLD2	Synthetically lethal with dpb11-1; required for DNA replication

YLR121C	YPS4	GPI-anchored aspartic protease

```
YLR183C		
```

YML060W	OGG1	43-kDa 8-oxo-guanine DNA glycosylase

```
YMR199W	CLN1	G(sub)1 cyclin
```

YNL173C	MDG1	Involved in G-protein mediated signal transduction

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

```
YPL187W	MF(ALPHA)1	mating factor alpha
```

YPL241C	CIN2	involved in microtubule function

late_g1: -202 to -104 nt upstream of the ATG start codon: 10 genes

YJL173C	RFA3	subunit 3 of replication factor-A

```
YLR457C	NBP1	Nap1p binding protein
```
```
YMR199W	CLN1	G(sub)1 cyclin
```

YNL173C	MDG1	Involved in G-protein mediated signal transduction

YNL273W	TOF1	Interacts with topoisomerase I

```
YNL300W		
```
```
YNL310C		
```
```
YPL208W		
```
```
YPL209C	IPL1	Protein kinase
```
```
YCL061C		
```

late_g1: -103 to -5 nt upstream of the ATG start codon: 5 genes

YBR278W	DPB3	C and C' subunits of DNA polymerase II

```
YDR013W		
```

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

```
YML061C	PIF1	5' to 3' DNA helicase
```
```
YPR120C	CLB5	B-type cyclin
```

s: -598 to -500 nt upstream of the ATG start codon: 7 genes

```
YDL094C		
```
```
YDL096C		
```

YER003C	PMI40	mannose-6-phosphate isomerase

```
YER018C	SPC25	component of spindle pole
```

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

```
YJL118W		
```

YKR010C	TOF2	topoisomerase I interacting factor 2

s: -499 to -401 nt upstream of the ATG start codon: 9 genes

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

```
YBR296C	PHO89	Probable Na+/Pi symporter
```

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

YCR065W	HCM1	Transcription factor (fork head domain)

YER001W	MNN1	Alpha-1,3-mannosyltransferase

```
YFR026C		
```

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

s: -400 to -302 nt upstream of the ATG start codon: 10 genes

```
YBR184W		
```

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

YDL197C	ASF2	Anti-silencing protein, involved in transcription

```
YDR219C		
```
```
YEL017W		
```
```
YER018C	SPC25	component of spindle pole
```

YIL126W	STH1	helicase related protein, snf2 homolog

```
YLR126C		
```
```
YMR048W		
```

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

s: -301 to -203 nt upstream of the ATG start codon: 7 genes

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

YBL052C	SAS3	involved in silencing at HMR

```
YER019W		
```

YFR037C	RSC8	chromatin remodeling complex subunit

```
YKL066W		
```

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

s: -202 to -104 nt upstream of the ATG start codon: 9 genes

```
YBL063W	KIP1	kinesin related protein
```

YBR276C	PPS1	dual specificity protein phosphatase

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

```
YEL018W		
```

YER017C	AFG3	ATP-dependent metalloprotease

```
YER019W		
```
```
YFR038W		
```

YJR137C	ECM17	Putative sulfite reductase

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

s: -103 to -5 nt upstream of the ATG start codon: 4 genes

YDL197C	ASF2	Anti-silencing protein, involved in transcription

```
YDR219C		
```

YFR037C	RSC8	chromatin remodeling complex subunit

```
YNL176C		
```

g2: -598 to -500 nt upstream of the ATG start codon: 2 genes

```
YBR043C		
```
```
YMR299C		
```

g2: -499 to -401 nt upstream of the ATG start codon: 4 genes

YDL198C	YHM1	(putative) mitochondrial carrier protein

YDR389W	SAC7	GTPase activating protein (GAP) for RHO1

```
YKL069W		
```
```
YOR273C		
```

g2: -400 to -302 nt upstream of the ATG start codon: 0 genes

g2: -301 to -203 nt upstream of the ATG start codon: 2 genes

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

YOL012C	HTA3	An evolutionarily conserved member of the histone H2A F/Z family of histone variants

g2: -202 to -104 nt upstream of the ATG start codon: 3 genes

```
YBR038W	CHS2	chitin synthase 2
```

YER069W	ARG5,6	N-acetyl-gamma-glutamyl-phosphate reductase and acetylglutamate kinase

YIL106W	MOB1	(putative) transcriptional regulator involved in mitosis

g2: -103 to -5 nt upstream of the ATG start codon: 3 genes

```
YKL048C	ELM1	protein kinase
```
```
YLR015W		
```
```
YNR009W		
```

m: -598 to -500 nt upstream of the ATG start codon: 3 genes

```
YDL048C	STP4	involved in tRNA splicing
```
```
YDR146C	SWI5	transcriptional activator
```

YGL021W	ALK1	DNA damage-responsive protein

m: -499 to -401 nt upstream of the ATG start codon: 5 genes

```
YAL040C	CLN3	G(sub)1 cyclin
```

YGL021W	ALK1	DNA damage-responsive protein

YLR353W	BUD8	involved in bud site selection

```
YPR157W		
```

YPR167C	MET16	3'phosphoadenylylsulfate reductase

m: -400 to -302 nt upstream of the ATG start codon: 2 genes

```
YAR018C	KIN3	protein kinase
```

YOR025W	HST3	involved in telomeric silencing

m: -301 to -203 nt upstream of the ATG start codon: 2 genes

YGL021W	ALK1	DNA damage-responsive protein

YGR108W	CLB1	G(sub)2-specific B-type cyclin

m: -202 to -104 nt upstream of the ATG start codon: 1 genes

```
YBR138C	HDR1	Unknown
```

m: -103 to -5 nt upstream of the ATG start codon: 3 genes

```
YML034W		
```

YPL242C	IQG1	Similar to mammalian IQGAP proteins

YPR167C	MET16	3'phosphoadenylylsulfate reductase

From Table IIa: Position-dependent, orientation-independent pentamers GGCCA and/or TGGCC are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIa: Position-dependent, orientation-independent pentamers
GGCCA and/or TGGCC
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: