Position dependent GCGTT

From Table IIb: Position-dependent, orientation-dependent pentamers
GCGTT
is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 3 genes

```
YER111C	SWI4	transcription factor
```
```
YGR281W	YOR1	ABC transporter
```
```
YNL046W		
```

early_g1: -499 to -401 nt upstream of the ATG start codon: 6 genes

```
YBR231C		
```
```
YDR511W		
```
```
YLR049C		
```
```
YLR254C		
```
```
YMR007W		
```

YNR001C	CIT1	citrate synthase. Nuclear encoded mitochondrial protein.

early_g1: -400 to -302 nt upstream of the ATG start codon: 4 genes

YBR083W	TEC1	transcription factor of the TEA/ATTS DNA-binding domain family, regulator of Ty1 expression

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YLR049C		
```

YLR079W	SIC1	Cdc28p-Clb5 protein kinase inhibitor

early_g1: -301 to -203 nt upstream of the ATG start codon: 3 genes

YDR368W	YPR1	similar to aldo-keto reductase

YLR273C	PIG1	Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit

```
YNL078W		
```

early_g1: -202 to -104 nt upstream of the ATG start codon: 4 genes

```
YBR067C	TIP1	cell wall mannoprotein
```
```
YDL181W	INH1	ATPase inhibitor
```
```
YML109W	ZDS2	Zds1 homolog
```
```
YPL004C		
```

early_g1: -103 to -5 nt upstream of the ATG start codon: 0 genes

late_g1: -598 to -500 nt upstream of the ATG start codon: 7 genes

```
YBR070C		involved in osmotolerance
```
```
YDL010W		
```

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YGL028C	SCW11	soluble cell wall protein
```
```
YGL089C	MF(ALPHA)2	alpha mating factor
```

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

```
YMR199W	CLN1	G(sub)1 cyclin
```

late_g1: -499 to -401 nt upstream of the ATG start codon: 8 genes

```
YDL010W		
```

YDL018C	ERP3	p24 protein involved in membrane trafficking

YDR297W	SUR2	Syringomycin response protein 2

```
YER070W	RNR1	ribonucleotide reductase
```

YFL008W	SMC1	omosome segregation protein

```
YJL196C	ELO1	Elongation enzyme 1
```

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

```
YLR234W	TOP3	DNA Topoisomerase III
```

late_g1: -400 to -302 nt upstream of the ATG start codon: 12 genes

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YGR109C	CLB6	B-type cyclin
```

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

```
YKR077W		
```
```
YLR234W	TOP3	DNA Topoisomerase III
```

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

```
YNL303W		
```

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

```
YCL061C		
```

late_g1: -301 to -203 nt upstream of the ATG start codon: 16 genes

```
YDL119C		
```

YDL227C	HO	Homothallic switching endonuclease

YDR507C	GIN4	putative serine/threonine kinase

```
YGR109C	CLB6	B-type cyclin
```
```
YLR326W		
```
```
YML061C	PIF1	5' to 3' DNA helicase
```

YMR179W	SPT21	non-specific DNA binding protein

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

YPL153C	RAD53	protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation

```
YPL208W		
```

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

```
YPR120C	CLB5	B-type cyclin
```

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

late_g1: -202 to -104 nt upstream of the ATG start codon: 31 genes

YBR073W	RDH54	Putative helicase similar to RAD54

```
YCL022C		
```
```
YDL010W		
```

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL101C	DUN1	protein kinase
```
```
YDL105W	QRI2	
```
```
YDL156W		
```

YDL227C	HO	Homothallic switching endonuclease

YGR152C	RSR1	GTP-binding protein, ras superfamily

YHR110W	ERP5	p24 protein involved in membrane trafficking

```
YHR154W	ESC4	involved in silencing
```

YJL074C	SMC3	involved in sister chromatid cohesion

```
YJL181W		
```

YKL042W	SPC42	component of the spindle pole body

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

```
YKR077W		
```

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

YLR233C	EST1	involved in telomere length regulation

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

YNL272C	SEC2	GDP/GTP exchange factor for Sec4p

YNL273W	TOF1	Interacts with topoisomerase I

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

```
YOL017W		
```

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

```
YOR074C	CDC21	Thymidylate synthase
```
```
YPL127C	HHO1	histone H1
```
```
YPL209C	IPL1	Protein kinase
```
```
YPL267W		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

late_g1: -103 to -5 nt upstream of the ATG start codon: 10 genes

```
YDL164C	CDC9	DNA ligase
```
```
YDR493W		
```
```
YGR109C	CLB6	B-type cyclin
```
```
YHR113W		Vacuolar aminopeptidase
```

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YLL022C	HIF1	interacts with histone acetyltransferase

YML102W	CAC2	p60 subunit of the yeast omatin Assembly Factor-I (CAF-I)

YMR078C	CTF18	(putative) involved in chromosome transmission during mitosis

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

```
YLR349W		
```

s: -598 to -500 nt upstream of the ATG start codon: 2 genes

YDR252W	BTT1	negative regulator of RNA polymerase II

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

s: -499 to -401 nt upstream of the ATG start codon: 5 genes

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

```
YBR007C		
```

YHR172W	SPC97	spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

YMR190C	SGS1	has DNA helicase signature motifs

s: -400 to -302 nt upstream of the ATG start codon: 8 genes

```
YBR007C		
```

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

YCR065W	HCM1	Transcription factor (fork head domain)

```
YDR113C	PDS1	42-kDa nuclear protein
```

YER001W	MNN1	Alpha-1,3-mannosyltransferase

```
YER118C	SSU81	Transmembrane osmosensor
```

YLR228C	ECM22	involved in cell wall biogenesis (putative)

YPL016W	SWI1	Zinc-finger transcription factor

s: -301 to -203 nt upstream of the ATG start codon: 11 genes

```
YBR156C		
```

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YER018C	SPC25	component of spindle pole
```
```
YER118C	SSU81	Transmembrane osmosensor
```

YFR037C	RSC8	chromatin remodeling complex subunit

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YHR172W	SPC97	spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP

```
YJL115W	ASF1	involved in silencing
```

YLL061W	MMP1	High affinity S-methylmethionine permease

```
YLR151C		
```

YMR190C	SGS1	has DNA helicase signature motifs

s: -202 to -104 nt upstream of the ATG start codon: 10 genes

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YDR179C		
```

YDR356W	NUF1	component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein

YEL061C	CIN8	kinesin-related protein involved in establishment and maintenance of mitotic spindle

YER016W	BIM1	microtubule-binding protein

YFR037C	RSC8	chromatin remodeling complex subunit

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

```
YOL019W		
```
```
YOR284W		
```

YPL016W	SWI1	Zinc-finger transcription factor

s: -103 to -5 nt upstream of the ATG start codon: 3 genes

YDR252W	BTT1	negative regulator of RNA polymerase II

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

```
YJL118W		
```

g2: -598 to -500 nt upstream of the ATG start codon: 2 genes

```
YBR038W	CHS2	chitin synthase 2
```
```
YKL069W		
```

g2: -499 to -401 nt upstream of the ATG start codon: 0 genes

g2: -400 to -302 nt upstream of the ATG start codon: 2 genes

YIL169C		serine-, threonine-rich protein

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

g2: -301 to -203 nt upstream of the ATG start codon: 2 genes

```
YKL053W		
```

YOR188W	MSB1	involved in polarized growth

g2: -202 to -104 nt upstream of the ATG start codon: 2 genes

YKL049C	CSE4	high similarity to histone H3 and to human centromere protein CENP-A

YOR188W	MSB1	involved in polarized growth

g2: -103 to -5 nt upstream of the ATG start codon: 3 genes

```
YDR366C		
```
```
YIL131C	FKH1	
```
```
YKL069W		
```

m: -598 to -500 nt upstream of the ATG start codon: 1 genes

YMR032W	HOF1	SH3 domain containing-protein

m: -499 to -401 nt upstream of the ATG start codon: 1 genes

YGR108W	CLB1	G(sub)2-specific B-type cyclin

m: -400 to -302 nt upstream of the ATG start codon: 2 genes

```
YGL116W	CDC20	beta-transducin homolog
```

YGR092W	DBF2	Serine/threonine protein kinase

m: -301 to -203 nt upstream of the ATG start codon: 3 genes

```
YBR138C	HDR1	Unknown
```
```
YDL048C	STP4	involved in tRNA splicing
```

YMR032W	HOF1	SH3 domain containing-protein

m: -202 to -104 nt upstream of the ATG start codon: 3 genes

YHL028W	WSC4	Putative integral membrane protein containing novel cysteine motif. Similarity to SLG1 (WSC1), WSC2 and WSC3

YNL053W	MSG5	Dual-specificity protein tyrosine phosphatase

```
YOL069W	NUF2	53-kDa coiled-coil protein
```

m: -103 to -5 nt upstream of the ATG start codon: 3 genes

```
YIL161W		
```

YIL162W	SUC2	invertase (sucrose hydrolyzing enzyme)

```
YOR315W		
```

From Table IIb: Position-dependent, orientation-dependent pentamers GCGTT is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIb: Position-dependent, orientation-dependent pentamers
GCGTT
is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: