Position dependent GCGTA

From Table IIa: Position-dependent, orientation-independent pentamers
GCGTA and/or TACGC
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 6 genes

YBR083W	TEC1	transcription factor of the TEA/ATTS DNA-binding domain family, regulator of Ty1 expression

```
YCL040W	GLK1	Glucokinase
```
```
YDL117W		
```
```
YIL009W	FAA3	Acyl CoA synthase
```

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YLR049C		
```

early_g1: -499 to -401 nt upstream of the ATG start codon: 6 genes

YBR083W	TEC1	transcription factor of the TEA/ATTS DNA-binding domain family, regulator of Ty1 expression

```
YHR022C		RAS-related protein
```

YKL163W	PIR3	Protein containing tandem internal repeats

```
YMR007W		
```
```
YOR065W	CYT1	Cytochrome c1
```
```
YOR066W		
```

early_g1: -400 to -302 nt upstream of the ATG start codon: 6 genes

```
YDL181W	INH1	ATPase inhibitor
```

YGR044C	RME1	zinc finger protein; negative regulator of meiosis; directly repressed by a1-a2 regulator

YHR005C	GPA1	alpha subunit of G protein coupled to mating factor receptors

```
YLR050C		
```

YLR274W	CDC46	MCM initiator complex protein

```
YNL046W		
```

early_g1: -301 to -203 nt upstream of the ATG start codon: 5 genes

```
YBR231C		
```

YKL150W	MCR1	NADH-cytochrome b5 reductase

YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

YLR273C	PIG1	Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit

```
YMR007W		
```

early_g1: -202 to -104 nt upstream of the ATG start codon: 2 genes

```
YDR511W		
```

YMR256C	COX7	subunit VII of cytochrome c oxidase

early_g1: -103 to -5 nt upstream of the ATG start codon: 10 genes

YBR052C		Homolog to YCR004, obr1 (S. pombe), trp repressor binding protein (E. coli)

```
YBR231C		
```
```
YDL179W	PCL9	Cyclin
```

YEL032W	MCM3	component of DNA replication initiator complex

```
YER111C	SWI4	transcription factor
```
```
YIL009W	FAA3	Acyl CoA synthase
```
```
YJL157C	FAR1	Cdc28p kinase inhibitor
```

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YLR049C		
```

YLR395C	COX8	Cytochrome-c oxidase chain VIII

late_g1: -598 to -500 nt upstream of the ATG start codon: 8 genes

YBR073W	RDH54	Putative helicase similar to RAD54

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YGL089C	MF(ALPHA)2	alpha mating factor
```

YHR038W	FIL1	Putative mitochondrial ribosome recycling factor

```
YJL196C	ELO1	Elongation enzyme 1
```

YLR121C	YPS4	GPI-anchored aspartic protease

YML102W	CAC2	p60 subunit of the yeast omatin Assembly Factor-I (CAF-I)

```
YPL187W	MF(ALPHA)1	mating factor alpha
```

late_g1: -499 to -401 nt upstream of the ATG start codon: 15 genes

YBR278W	DPB3	C and C' subunits of DNA polymerase II

```
YDL010W		
```

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YDL105W	QRI2	
```
```
YER070W	RNR1	ribonucleotide reductase
```
```
YGR109C	CLB6	B-type cyclin
```

YGR152C	RSR1	GTP-binding protein, ras superfamily

```
YHR113W		Vacuolar aminopeptidase
```

YIL026C	IRR1	involved in cell morphology

YKL045W	PRI2	p58 polypeptide of DNA primase

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

```
YLR326W		
```

YML027W	YOX1	Homeobox-domain containing protein

```
YPL014W		
```
```
YPL256C	CLN2	G(sub)1 cyclin
```

late_g1: -400 to -302 nt upstream of the ATG start codon: 17 genes

```
YBR071W		
```
```
YDL119C		
```
```
YDL127W	PCL2	G1 cyclin
```
```
YDR013W		
```
```
YER070W	RNR1	ribonucleotide reductase
```

YFL008W	SMC1	omosome segregation protein

```
YGR109C	CLB6	B-type cyclin
```

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YKL045W	PRI2	p58 polypeptide of DNA primase

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

```
YNL262W	POL2	DNA polymerase II
```

YNL309W	STB1	Interacts with the putative transcription factor Sin3p

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

```
YOL017W		
```
```
YPL209C	IPL1	Protein kinase
```
```
YPL256C	CLN2	G(sub)1 cyclin
```
```
YPR174C		
```

late_g1: -301 to -203 nt upstream of the ATG start codon: 17 genes

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

```
YBR071W		
```
```
YDL010W		
```

YDL018C	ERP3	p24 protein involved in membrane trafficking

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

YDR507C	GIN4	putative serine/threonine kinase

```
YER070W	RNR1	ribonucleotide reductase
```

YKL042W	SPC42	component of the spindle pole body

```
YKR077W		
```
```
YKR083C		
```
```
YLR326W		
```

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

```
YPL014W		
```

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

YPL153C	RAD53	protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation

late_g1: -202 to -104 nt upstream of the ATG start codon: 33 genes

```
YAR003W		beta transducin domain
```

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

```
YBR070C		involved in osmotolerance
```

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

```
YCL024W		Ser/Thr protein kinase
```

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YDL124W		
```
```
YDL156W		
```

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

YFL008W	SMC1	omosome segregation protein

```
YGL028C	SCW11	soluble cell wall protein
```

YGR152C	RSR1	GTP-binding protein, ras superfamily

YIL026C	IRR1	involved in cell morphology

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL108W	SLD2	Synthetically lethal with dpb11-1; required for DNA replication

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YLR032W	RAD5	putative ATPase/DNA helicase

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

```
YLR376C		
```
```
YLR381W		
```

YLR383W	RHC18	involved in recombination repair

```
YNL262W	POL2	DNA polymerase II
```

YNL273W	TOF1	Interacts with topoisomerase I

```
YNL300W		
```

YNL309W	STB1	Interacts with the putative transcription factor Sin3p

```
YOL017W		
```
```
YOR144C		
```

YPL124W	NIP29	spindle pole body associated protein

```
YPL267W		
```

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

late_g1: -103 to -5 nt upstream of the ATG start codon: 19 genes

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

YBR252W	DUT1	dUTP pyrophosphatase (dUTPase)

YBR278W	DPB3	C and C' subunits of DNA polymerase II

```
YCL022C		
```
```
YCL024W		Ser/Thr protein kinase
```

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YDR493W		
```
```
YGL027C	CWH41	glucosidase I
```
```
YGL028C	SCW11	soluble cell wall protein
```

YGR238C	KEL2	involved in cell fusion and morphology; contains six Kelch repeats

```
YJL018W		
```

YJL173C	RFA3	subunit 3 of replication factor-A

```
YJL181W		
```
```
YJL187C	SWE1	protein kinase homolog
```

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

```
YLR381W		
```
```
YML021C	UNG1	uracil DNA glycosylase
```

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

s: -598 to -500 nt upstream of the ATG start codon: 4 genes

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

YDR252W	BTT1	negative regulator of RNA polymerase II

YER003C	PMI40	mannose-6-phosphate isomerase

```
YER019W		
```

s: -499 to -401 nt upstream of the ATG start codon: 5 genes

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

```
YBR184W		
```

YER017C	AFG3	ATP-dependent metalloprotease

```
YLL062C		
```
```
YOL019W		
```

s: -400 to -302 nt upstream of the ATG start codon: 12 genes

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

```
YBR007C		
```

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YER018C	SPC25	component of spindle pole
```
```
YER118C	SSU81	Transmembrane osmosensor
```
```
YFR026C		
```

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YJR006W	HYS2	DNA polymerase delta 55 KD subunit

```
YKL066W		
```
```
YLR151C		
```

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

s: -301 to -203 nt upstream of the ATG start codon: 10 genes

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

```
YBR156C		
```

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YDR113C	PDS1	42-kDa nuclear protein
```

YDR252W	BTT1	negative regulator of RNA polymerase II

```
YER018C	SPC25	component of spindle pole
```
```
YJL115W	ASF1	involved in silencing
```

YJR137C	ECM17	Putative sulfite reductase

YKL067W	YNK1	Nucleoside diphosphate kinase

```
YLL062C		
```

s: -202 to -104 nt upstream of the ATG start codon: 13 genes

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

```
YBL063W	KIP1	kinesin related protein
```
```
YBR156C		
```

YBR276C	PPS1	dual specificity protein phosphatase

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

YDR356W	NUF1	component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein

YER016W	BIM1	microtubule-binding protein

YER017C	AFG3	ATP-dependent metalloprotease

```
YER018C	SPC25	component of spindle pole
```

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

```
YJL115W	ASF1	involved in silencing
```
```
YJL118W		
```
```
YLR151C		
```

s: -103 to -5 nt upstream of the ATG start codon: 10 genes

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

```
YBR296C	PHO89	Probable Na+/Pi symporter
```

YEL061C	CIN8	kinesin-related protein involved in establishment and maintenance of mitotic spindle

```
YER019W		
```
```
YJL115W	ASF1	involved in silencing
```

YKR010C	TOF2	topoisomerase I interacting factor 2

YLL061W	MMP1	High affinity S-methylmethionine permease

```
YLR151C		
```
```
YMR048W		
```

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

g2: -598 to -500 nt upstream of the ATG start codon: 4 genes

YBR104W	YMC2	mitochondrial carrier protein

YJL137C	GLG2	glycogen synthesis initiator

YOL012C	HTA3	An evolutionarily conserved member of the histone H2A F/Z family of histone variants

```
YOR073W		
```

g2: -499 to -401 nt upstream of the ATG start codon: 8 genes

```
YBL032W		
```

YBR104W	YMC2	mitochondrial carrier protein

YCL014W	BUD3	involved in bud site selection

```
YCR085W		
```

YDR389W	SAC7	GTPase activating protein (GAP) for RHO1

```
YIL050W	PCL7	PHO85 cyclin
```
```
YIL158W		
```

YIL169C		serine-, threonine-rich protein

g2: -400 to -302 nt upstream of the ATG start codon: 2 genes

YBL097W	BRN1	involved in chromosome maintenance; similar to Drosophila barren, Xenopus XCAP-H, and human BRRN1

```
YDR366C		
```

g2: -301 to -203 nt upstream of the ATG start codon: 5 genes

YCL014W	BUD3	involved in bud site selection

```
YIL131C	FKH1	
```
```
YKL053W		
```
```
YMR215W		
```

YOL012C	HTA3	An evolutionarily conserved member of the histone H2A F/Z family of histone variants

g2: -202 to -104 nt upstream of the ATG start codon: 2 genes

YGL255W	ZRT1	high-affinity zinc transport protein

YOR188W	MSB1	involved in polarized growth

g2: -103 to -5 nt upstream of the ATG start codon: 2 genes

```
YMR003W		
```
```
YNR009W		
```

m: -598 to -500 nt upstream of the ATG start codon: 6 genes

```
YAR018C	KIN3	protein kinase
```

YCL037C	SRO9	involved in actin filament organization

YGR143W	SKN1	encodes a predicted type II membrane protein highly homologous to Kre6p

```
YIL167W		
```
```
YOL137W		
```
```
YPR157W		
```

m: -499 to -401 nt upstream of the ATG start codon: 4 genes

YJL079C	PRY1	Similar to plant PR-1 class of pathogen related proteins

YLR353W	BUD8	involved in bud site selection

YNL053W	MSG5	Dual-specificity protein tyrosine phosphatase

```
YPR157W		
```

m: -400 to -302 nt upstream of the ATG start codon: 2 genes

```
YBR138C	HDR1	Unknown
```

YGR230W	BNS1	similar to Spo12, involved in sporulation

m: -301 to -203 nt upstream of the ATG start codon: 7 genes

YAL022C	FUN26	predicted membrane protein

```
YDL138W	RGT2	glucose permease
```

YIL162W	SUC2	invertase (sucrose hydrolyzing enzyme)

```
YKR021W		
```
```
YML119W		
```
```
YOL069W	NUF2	53-kDa coiled-coil protein
```

YPL242C	IQG1	Similar to mammalian IQGAP proteins

m: -202 to -104 nt upstream of the ATG start codon: 2 genes

YGR143W	SKN1	encodes a predicted type II membrane protein highly homologous to Kre6p

```
YHR023W	MYO1	Class II Myosin
```

m: -103 to -5 nt upstream of the ATG start codon: 7 genes

```
YAL040C	CLN3	G(sub)1 cyclin
```
```
YCL038C		Membrane transporter
```

YCR042C	TSM1	TATA binding protein-associated factor (TAF)

YGR108W	CLB1	G(sub)2-specific B-type cyclin

YIL162W	SUC2	invertase (sucrose hydrolyzing enzyme)

```
YKR021W		
```

YOR025W	HST3	involved in telomeric silencing

From Table IIa: Position-dependent, orientation-independent pentamers GCGTA and/or TACGC are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIa: Position-dependent, orientation-independent pentamers
GCGTA and/or TACGC
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: