Position dependent GCCGC

From Table IIa: Position-dependent, orientation-independent pentamers
GCCGC and/or GCGGC
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 7 genes

YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

```
YBR200W	BEM1	contains two SH3 domains
```
```
YER111C	SWI4	transcription factor
```
```
YHL026C		
```

YML110C	COQ5	Putative mitochondrial C-methyltransferase

```
YOR065W	CYT1	Cytochrome c1
```
```
YPL158C		
```

early_g1: -499 to -401 nt upstream of the ATG start codon: 5 genes

```
YDL181W	INH1	ATPase inhibitor
```
```
YGR035C		
```

YGR044C	RME1	zinc finger protein; negative regulator of meiosis; directly repressed by a1-a2 regulator

```
YOR065W	CYT1	Cytochrome c1
```
```
YOR066W		
```

early_g1: -400 to -302 nt upstream of the ATG start codon: 9 genes

```
YBR053C		
```
```
YBR067C	TIP1	cell wall mannoprotein
```

YBR202W	CDC47	MCM3 protein homolog (S. cerevisiae)

```
YCL040W	GLK1	Glucokinase
```
```
YGR035C		
```
```
YLR254C		
```
```
YMR254C		
```
```
YNL046W		
```

YNR001C	CIT1	citrate synthase. Nuclear encoded mitochondrial protein.

early_g1: -301 to -203 nt upstream of the ATG start codon: 8 genes

```
YBR231C		
```
```
YCL040W	GLK1	Glucokinase
```
```
YDL181W	INH1	ATPase inhibitor
```
```
YGR035C		
```

YLR273C	PIG1	Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit

YLR274W	CDC46	MCM initiator complex protein

```
YNL078W		
```
```
YOR264W		
```

early_g1: -202 to -104 nt upstream of the ATG start codon: 3 genes

```
YML109W	ZDS2	Zds1 homolog
```

YMR256C	COX7	subunit VII of cytochrome c oxidase

YPR019W	CDC54	Involved in initiation of DNA replication

early_g1: -103 to -5 nt upstream of the ATG start codon: 1 genes

```
YHL026C		
```

late_g1: -598 to -500 nt upstream of the ATG start codon: 7 genes

```
YCL024W		Ser/Thr protein kinase
```
```
YGL028C	SCW11	soluble cell wall protein
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

YIL026C	IRR1	involved in cell morphology

```
YLR286C	CTS1	Endochitinase
```

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

YPR175W	DPB2	DNA polymerase epsilon, subunit B

late_g1: -499 to -401 nt upstream of the ATG start codon: 8 genes

YDR297W	SUR2	Syringomycin response protein 2

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

```
YLR326W		
```
```
YPL014W		
```
```
YPL127C	HHO1	histone H1
```

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

late_g1: -400 to -302 nt upstream of the ATG start codon: 8 genes

```
YDL105W	QRI2	
```

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

YLR103C	CDC45	omosomal DNA replication initiation protein

```
YLR183C		
```

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

YOR316C	COT1	involved in cobalt accumulation

```
YPL208W		
```

late_g1: -301 to -203 nt upstream of the ATG start codon: 5 genes

```
YDL164C	CDC9	DNA ligase
```

YHR110W	ERP5	p24 protein involved in membrane trafficking

```
YKR083C		
```

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

late_g1: -202 to -104 nt upstream of the ATG start codon: 5 genes

YDR297W	SUR2	Syringomycin response protein 2

YHR038W	FIL1	Putative mitochondrial ribosome recycling factor

```
YHR154W	ESC4	involved in silencing
```
```
YLR183C		
```

YNL273W	TOF1	Interacts with topoisomerase I

late_g1: -103 to -5 nt upstream of the ATG start codon: 3 genes

```
YHR153C	SPO16	sporulation protein
```

YLR121C	YPS4	GPI-anchored aspartic protease

```
YPR120C	CLB5	B-type cyclin
```

s: -598 to -500 nt upstream of the ATG start codon: 10 genes

```
YBL063W	KIP1	kinesin related protein
```

YCR065W	HCM1	Transcription factor (fork head domain)

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YDR219C		
```
```
YER019W		
```

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YIL140W	SRO4	localizes to the plasma membrane

```
YJL115W	ASF1	involved in silencing
```

YJR137C	ECM17	Putative sulfite reductase

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

s: -499 to -401 nt upstream of the ATG start codon: 7 genes

```
YBL063W	KIP1	kinesin related protein
```

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

YDR252W	BTT1	negative regulator of RNA polymerase II

YER017C	AFG3	ATP-dependent metalloprotease

```
YFR026C		
```

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

s: -400 to -302 nt upstream of the ATG start codon: 6 genes

YBR275C	RIF1	RAP1-interacting factor, involved in establishment of repressed chromatin

YDR252W	BTT1	negative regulator of RNA polymerase II

```
YEL017W		
```

YER003C	PMI40	mannose-6-phosphate isomerase

```
YER019W		
```

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

s: -301 to -203 nt upstream of the ATG start codon: 3 genes

```
YBR007C		
```

YER017C	AFG3	ATP-dependent metalloprotease

YFR037C	RSC8	chromatin remodeling complex subunit

s: -202 to -104 nt upstream of the ATG start codon: 10 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

YER003C	PMI40	mannose-6-phosphate isomerase

```
YFR026C		
```

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YJR006W	HYS2	DNA polymerase delta 55 KD subunit

YJR137C	ECM17	Putative sulfite reductase

YMR198W	CIK1	spindle pole body associated protein

YNL073W	MSK1	mitochondrial lysine-tRNA synthetase

YPL016W	SWI1	Zinc-finger transcription factor

s: -103 to -5 nt upstream of the ATG start codon: 4 genes

```
YBR184W		
```

YEL061C	CIN8	kinesin-related protein involved in establishment and maintenance of mitotic spindle

YIL126W	STH1	helicase related protein, snf2 homolog

YOR026W	BUB3	cell cycle checkpoint protein

g2: -598 to -500 nt upstream of the ATG start codon: 8 genes

```
YBL032W		
```
```
YCL012W		
```
```
YCL012W		
```
```
YCR073C	SSK22	protein kinase
```
```
YJL092W	HPR5	DNA helicase
```

YJL137C	GLG2	glycogen synthesis initiator

```
YLL046C	RNP1	ribonucleoprotein 1
```

YOR274W	MOD5	transfer RNA isopentenyl transferase

g2: -499 to -401 nt upstream of the ATG start codon: 9 genes

```
YBR038W	CHS2	chitin synthase 2
```
```
YCL012W		
```
```
YCL012W		
```

YJR112W	NNF1	involved in nuclear function

```
YKL048C	ELM1	protein kinase
```
```
YKL052C		
```

YOL012C	HTA3	An evolutionarily conserved member of the histone H2A F/Z family of histone variants

YOR274W	MOD5	transfer RNA isopentenyl transferase

YPL116W	HOS3	sequence similar to the histone deacetylase Hda1p

g2: -400 to -302 nt upstream of the ATG start codon: 8 genes

```
YBL032W		
```
```
YCR086W		
```
```
YDR324C		
```
```
YDR451C		
```
```
YJL092W	HPR5	DNA helicase
```

YJL099W	CHS6	involved in chitin biosynthesis

```
YJR110W		
```
```
YKL053W		
```

g2: -301 to -203 nt upstream of the ATG start codon: 8 genes

```
YBR043C		
```

YBR104W	YMC2	mitochondrial carrier protein

```
YCR086W		
```

YDL198C	YHM1	(putative) mitochondrial carrier protein

```
YKL048C	ELM1	protein kinase
```
```
YKL052C		
```
```
YLL046C	RNP1	ribonucleoprotein 1
```

YOL012C	HTA3	An evolutionarily conserved member of the histone H2A F/Z family of histone variants

g2: -202 to -104 nt upstream of the ATG start codon: 4 genes

```
YBL032W		
```

YBR104W	YMC2	mitochondrial carrier protein

```
YDR366C		
```
```
YLL046C	RNP1	ribonucleoprotein 1
```

g2: -103 to -5 nt upstream of the ATG start codon: 2 genes

YBR104W	YMC2	mitochondrial carrier protein

YOL012C	HTA3	An evolutionarily conserved member of the histone H2A F/Z family of histone variants

m: -598 to -500 nt upstream of the ATG start codon: 3 genes

```
YDL048C	STP4	involved in tRNA splicing
```
```
YDL138W	RGT2	glucose permease
```

YJL079C	PRY1	Similar to plant PR-1 class of pathogen related proteins

m: -499 to -401 nt upstream of the ATG start codon: 3 genes

YCL037C	SRO9	involved in actin filament organization

YLR131C	ACE2	zinc finger transcription factor

```
YOL014W		
```

m: -400 to -302 nt upstream of the ATG start codon: 6 genes

YHL028W	WSC4	Putative integral membrane protein containing novel cysteine motif. Similarity to SLG1 (WSC1), WSC2 and WSC3

```
YKL129C	MYO3	myosin I
```
```
YKR021W		
```

YMR001C	CDC5	protein kinase which functions at the G(sub)2/M boundary

```
YNL057W		
```
```
YOL014W		
```

m: -301 to -203 nt upstream of the ATG start codon: 0 genes

m: -202 to -104 nt upstream of the ATG start codon: 2 genes

```
YBR138C	HDR1	Unknown
```
```
YCL038C		Membrane transporter
```

m: -103 to -5 nt upstream of the ATG start codon: 2 genes

YJL079C	PRY1	Similar to plant PR-1 class of pathogen related proteins

```
YML034W		
```

From Table IIa: Position-dependent, orientation-independent pentamers GCCGC and/or GCGGC are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIa: Position-dependent, orientation-independent pentamers
GCCGC and/or GCGGC
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: