Position dependent GCCAC

From Table IIa: Position-dependent, orientation-independent pentamers
GCCAC and/or GTGGC
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 4 genes

YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YLR254C		
```
```
YOR065W	CYT1	Cytochrome c1
```

early_g1: -499 to -401 nt upstream of the ATG start codon: 8 genes

YBR052C		Homolog to YCR004, obr1 (S. pombe), trp repressor binding protein (E. coli)

```
YBR231C		
```
```
YCL040W	GLK1	Glucokinase
```
```
YDL117W		
```
```
YDL181W	INH1	ATPase inhibitor
```

YEL032W	MCM3	component of DNA replication initiator complex

```
YIL009W	FAA3	Acyl CoA synthase
```

YML110C	COQ5	Putative mitochondrial C-methyltransferase

early_g1: -400 to -302 nt upstream of the ATG start codon: 6 genes

YGR044C	RME1	zinc finger protein; negative regulator of meiosis; directly repressed by a1-a2 regulator

```
YGR281W	YOR1	ABC transporter
```
```
YLR049C		
```

YLR273C	PIG1	Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit

```
YNL078W		
```

YPL058C	PDR12	multidrug resistance transporter

early_g1: -301 to -203 nt upstream of the ATG start codon: 6 genes

```
YBR157C		
```
```
YBR231C		
```
```
YIL009W	FAA3	Acyl CoA synthase
```
```
YLR050C		
```
```
YML109W	ZDS2	Zds1 homolog
```
```
YPR002W		
```

early_g1: -202 to -104 nt upstream of the ATG start codon: 1 genes

YLR274W	CDC46	MCM initiator complex protein

early_g1: -103 to -5 nt upstream of the ATG start codon: 5 genes

YBR052C		Homolog to YCR004, obr1 (S. pombe), trp repressor binding protein (E. coli)

```
YDR511W		
```
```
YLR050C		
```

YLR395C	COX8	Cytochrome-c oxidase chain VIII

YML110C	COQ5	Putative mitochondrial C-methyltransferase

late_g1: -598 to -500 nt upstream of the ATG start codon: 13 genes

```
YDL010W		
```
```
YDL119C		
```
```
YJL018W		
```
```
YJL181W		
```

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR233C	EST1	involved in telomere length regulation

```
YML061C	PIF1	5' to 3' DNA helicase
```

YML102W	CAC2	p60 subunit of the yeast omatin Assembly Factor-I (CAF-I)

```
YNL262W	POL2	DNA polymerase II
```

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

YOR316C	COT1	involved in cobalt accumulation

```
YPL267W		
```

late_g1: -499 to -401 nt upstream of the ATG start codon: 12 genes

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

```
YDR493W		
```

YHR038W	FIL1	Putative mitochondrial ribosome recycling factor

```
YHR154W	ESC4	involved in silencing
```

YIL159W	BNR1	involved in actin filament organization

```
YJL187C	SWE1	protein kinase homolog
```

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YLR121C	YPS4	GPI-anchored aspartic protease

```
YLR376C		
```

YML027W	YOX1	Homeobox-domain containing protein

YOR316C	COT1	involved in cobalt accumulation

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

late_g1: -400 to -302 nt upstream of the ATG start codon: 14 genes

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

```
YCL024W		Ser/Thr protein kinase
```
```
YDL124W		
```
```
YDL164C	CDC9	DNA ligase
```

YGR041W	BUD9	involved in bud-site selection

```
YHR153C	SPO16	sporulation protein
```

YIL159W	BNR1	involved in actin filament organization

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YNL273W	TOF1	Interacts with topoisomerase I

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

```
YPL014W		
```
```
YPR174C		
```
```
YLR349W		
```

late_g1: -301 to -203 nt upstream of the ATG start codon: 9 genes

```
YDL010W		
```
```
YDL124W		
```
```
YDL156W		
```

YDR507C	GIN4	putative serine/threonine kinase

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YLR183C		
```
```
YLR234W	TOP3	DNA Topoisomerase III
```
```
YLR381W		
```

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

late_g1: -202 to -104 nt upstream of the ATG start codon: 6 genes

YBR073W	RDH54	Putative helicase similar to RAD54

```
YGL027C	CWH41	glucosidase I
```

YJL173C	RFA3	subunit 3 of replication factor-A

YKL165C	MCD4	(putative) involved in cell polarity

```
YLR457C	NBP1	Nap1p binding protein
```

YNL173C	MDG1	Involved in G-protein mediated signal transduction

late_g1: -103 to -5 nt upstream of the ATG start codon: 7 genes

YIL159W	BNR1	involved in actin filament organization

YLR103C	CDC45	omosomal DNA replication initiation protein

```
YLR183C		
```

YLR233C	EST1	involved in telomere length regulation

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

YPL124W	NIP29	spindle pole body associated protein

s: -598 to -500 nt upstream of the ATG start codon: 11 genes

```
YBR184W		
```
```
YBR296C	PHO89	Probable Na+/Pi symporter
```

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YDR113C	PDS1	42-kDa nuclear protein
```

YER003C	PMI40	mannose-6-phosphate isomerase

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YIR017C	MET28	transcriptional activator in the Cbf1p-Met4p-Met28p complex

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

```
YLR151C		
```

YPL016W	SWI1	Zinc-finger transcription factor

s: -499 to -401 nt upstream of the ATG start codon: 10 genes

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

YER001W	MNN1	Alpha-1,3-mannosyltransferase

```
YFR026C		
```

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YIL140W	SRO4	localizes to the plasma membrane

YJR006W	HYS2	DNA polymerase delta 55 KD subunit

YMR190C	SGS1	has DNA helicase signature motifs

```
YNL176C		
```
```
YOL019W		
```

YPR141C	KAR3	kinesin-like nuclear fusion protein

s: -400 to -302 nt upstream of the ATG start codon: 12 genes

YER001W	MNN1	Alpha-1,3-mannosyltransferase

YER003C	PMI40	mannose-6-phosphate isomerase

```
YER018C	SPC25	component of spindle pole
```
```
YER019W		
```
```
YFR026C		
```
```
YFR038W		
```

YIL126W	STH1	helicase related protein, snf2 homolog

```
YJL115W	ASF1	involved in silencing
```

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

```
YMR048W		
```

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

```
YNL176C		
```

s: -301 to -203 nt upstream of the ATG start codon: 19 genes

```
YBR296C	PHO89	Probable Na+/Pi symporter
```

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YEL017W		
```

YER001W	MNN1	Alpha-1,3-mannosyltransferase

YER017C	AFG3	ATP-dependent metalloprotease

```
YER019W		
```

YFR037C	RSC8	chromatin remodeling complex subunit

```
YFR038W		
```

YIR017C	MET28	transcriptional activator in the Cbf1p-Met4p-Met28p complex

```
YJL115W	ASF1	involved in silencing
```
```
YJL118W		
```

YJR006W	HYS2	DNA polymerase delta 55 KD subunit

YJR137C	ECM17	Putative sulfite reductase

```
YKL066W		
```
```
YLR126C		
```
```
YLR151C		
```
```
YMR048W		
```
```
YOL019W		
```

YPL016W	SWI1	Zinc-finger transcription factor

s: -202 to -104 nt upstream of the ATG start codon: 9 genes

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

```
YDL094C		
```

YIL126W	STH1	helicase related protein, snf2 homolog

YIL140W	SRO4	localizes to the plasma membrane

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

YLL061W	MMP1	High affinity S-methylmethionine permease

```
YLL062C		
```
```
YLR126C		
```

YMR190C	SGS1	has DNA helicase signature motifs

s: -103 to -5 nt upstream of the ATG start codon: 5 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

```
YBL063W	KIP1	kinesin related protein
```
```
YDL096C		
```

YKR010C	TOF2	topoisomerase I interacting factor 2

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

g2: -598 to -500 nt upstream of the ATG start codon: 7 genes

```
YBR038W	CHS2	chitin synthase 2
```
```
YCL063W		
```
```
YDR325W		
```
```
YKL053W		
```
```
YNR009W		
```

YOL012C	HTA3	An evolutionarily conserved member of the histone H2A F/Z family of histone variants

```
YOR273C		
```

g2: -499 to -401 nt upstream of the ATG start codon: 9 genes

```
YBL032W		
```
```
YCR073C	SSK22	protein kinase
```

YDL198C	YHM1	(putative) mitochondrial carrier protein

```
YDR325W		
```

YDR389W	SAC7	GTPase activating protein (GAP) for RHO1

YJR112W	NNF1	involved in nuclear function

```
YLR015W		
```
```
YOR273C		
```
```
YMR299C		
```

g2: -400 to -302 nt upstream of the ATG start codon: 3 genes

```
YBR043C		
```
```
YCR073C	SSK22	protein kinase
```
```
YNR009W		
```

g2: -301 to -203 nt upstream of the ATG start codon: 3 genes

YDL198C	YHM1	(putative) mitochondrial carrier protein

YJR112W	NNF1	involved in nuclear function

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

g2: -202 to -104 nt upstream of the ATG start codon: 3 genes

YER069W	ARG5,6	N-acetyl-gamma-glutamyl-phosphate reductase and acetylglutamate kinase

```
YGL101W		
```
```
YMR003W		
```

g2: -103 to -5 nt upstream of the ATG start codon: 2 genes

```
YCR073C	SSK22	protein kinase
```
```
YLR015W		
```

m: -598 to -500 nt upstream of the ATG start codon: 3 genes

```
YAL040C	CLN3	G(sub)1 cyclin
```
```
YDL048C	STP4	involved in tRNA splicing
```

YPR167C	MET16	3'phosphoadenylylsulfate reductase

m: -499 to -401 nt upstream of the ATG start codon: 8 genes

```
YCL038C		Membrane transporter
```
```
YDL048C	STP4	involved in tRNA splicing
```

YGL021W	ALK1	DNA damage-responsive protein

```
YHR151C		
```
```
YOL069W	NUF2	53-kDa coiled-coil protein
```
```
YOR229W	WTM2	Transcriptional modulator
```
```
YPR157W		
```

YPR167C	MET16	3'phosphoadenylylsulfate reductase

m: -400 to -302 nt upstream of the ATG start codon: 7 genes

```
YKR021W		
```
```
YML119W		
```

YMR032W	HOF1	SH3 domain containing-protein

```
YOL070C		
```

YOR025W	HST3	involved in telomeric silencing

YOR058C	ASE1	encodes component of the spindle midzone

```
YPL186C		
```

m: -301 to -203 nt upstream of the ATG start codon: 5 genes

```
YAR018C	KIN3	protein kinase
```

YGL021W	ALK1	DNA damage-responsive protein

YMR001C	CDC5	protein kinase which functions at the G(sub)2/M boundary

```
YOL014W		
```

YOR025W	HST3	involved in telomeric silencing

m: -202 to -104 nt upstream of the ATG start codon: 5 genes

YGR108W	CLB1	G(sub)2-specific B-type cyclin

YHR152W	SPO12	20 kDa protein with negatively charged C-terminus required for function; thought to be a positive regulator of exit from M-phase in mitosis and meiosis. Spo12p interacts with Dbf2p and Dbf20p protein kinases.

```
YML034W		
```
```
YMR031C		
```

YPR167C	MET16	3'phosphoadenylylsulfate reductase

m: -103 to -5 nt upstream of the ATG start codon: 2 genes

YGL201C	MCM6	component of MCM initiator complex involved in DNA replication

YJL079C	PRY1	Similar to plant PR-1 class of pathogen related proteins

From Table IIa: Position-dependent, orientation-independent pentamers GCCAC and/or GTGGC are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIa: Position-dependent, orientation-independent pentamers
GCCAC and/or GTGGC
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: