Position dependent GACGC

From Table IIa: Position-dependent, orientation-independent pentamers
GACGC and/or GCGTC
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 9 genes

```
YER111C	SWI4	transcription factor
```
```
YHL026C		
```
```
YHR022C		RAS-related protein
```

YKL150W	MCR1	NADH-cytochrome b5 reductase

YKL185W	ASH1	probable purine nucleotide-binding protein

```
YLR050C		
```
```
YLR254C		
```

YML110C	COQ5	Putative mitochondrial C-methyltransferase

YPR019W	CDC54	Involved in initiation of DNA replication

early_g1: -499 to -401 nt upstream of the ATG start codon: 7 genes

```
YBR200W	BEM1	contains two SH3 domains
```
```
YER111C	SWI4	transcription factor
```
```
YGR035C		
```
```
YIL009W	FAA3	Acyl CoA synthase
```

YJL194W	CDC6	pre-initiation complex component

YLR274W	CDC46	MCM initiator complex protein

```
YMR007W		
```

early_g1: -400 to -302 nt upstream of the ATG start codon: 7 genes

```
YDL179W	PCL9	Cyclin
```
```
YDL181W	INH1	ATPase inhibitor
```

YGR183C	QCR9	7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex

YHR005C	GPA1	alpha subunit of G protein coupled to mating factor receptors

YMR256C	COX7	subunit VII of cytochrome c oxidase

YNR001C	CIT1	citrate synthase. Nuclear encoded mitochondrial protein.

```
YPL066W		
```

early_g1: -301 to -203 nt upstream of the ATG start codon: 7 genes

YBR052C		Homolog to YCR004, obr1 (S. pombe), trp repressor binding protein (E. coli)

```
YBR157C		
```
```
YCL040W	GLK1	Glucokinase
```

YJL194W	CDC6	pre-initiation complex component

YKL150W	MCR1	NADH-cytochrome b5 reductase

```
YLR049C		
```

YMR256C	COX7	subunit VII of cytochrome c oxidase

early_g1: -202 to -104 nt upstream of the ATG start codon: 4 genes

```
YHL026C		
```

YJL194W	CDC6	pre-initiation complex component

YLR079W	SIC1	Cdc28p-Clb5 protein kinase inhibitor

```
YML109W	ZDS2	Zds1 homolog
```

early_g1: -103 to -5 nt upstream of the ATG start codon: 1 genes

YLR273C	PIG1	Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit

late_g1: -598 to -500 nt upstream of the ATG start codon: 19 genes

```
YAR003W		beta transducin domain
```

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL127W	PCL2	G1 cyclin
```

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YGL027C	CWH41	glucosidase I
```

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YLL022C	HIF1	interacts with histone acetyltransferase

```
YLR381W		
```
```
YML061C	PIF1	5' to 3' DNA helicase
```

YML102W	CAC2	p60 subunit of the yeast omatin Assembly Factor-I (CAF-I)

YMR078C	CTF18	(putative) involved in chromosome transmission during mitosis

```
YMR199W	CLN1	G(sub)1 cyclin
```

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

```
YNL310C		
```

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

late_g1: -499 to -401 nt upstream of the ATG start codon: 18 genes

```
YAR003W		beta transducin domain
```
```
YBR070C		involved in osmotolerance
```
```
YBR071W		
```
```
YDL105W	QRI2	
```
```
YDL127W	PCL2	G1 cyclin
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

```
YGR109C	CLB6	B-type cyclin
```
```
YHR154W	ESC4	involved in silencing
```

YKL108W	SLD2	Synthetically lethal with dpb11-1; required for DNA replication

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLR103C	CDC45	omosomal DNA replication initiation protein

YML027W	YOX1	Homeobox-domain containing protein

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL273W	TOF1	Interacts with topoisomerase I

```
YNL300W		
```
```
YPL014W		
```

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

```
YLR349W		
```

late_g1: -400 to -302 nt upstream of the ATG start codon: 15 genes

```
YDL127W	PCL2	G1 cyclin
```

YDR297W	SUR2	Syringomycin response protein 2

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

YDR507C	GIN4	putative serine/threonine kinase

```
YER070W	RNR1	ribonucleotide reductase
```
```
YJL187C	SWE1	protein kinase homolog
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YLR103C	CDC45	omosomal DNA replication initiation protein

```
YLR326W		
```

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

YML027W	YOX1	Homeobox-domain containing protein

```
YML061C	PIF1	5' to 3' DNA helicase
```

YML102W	CAC2	p60 subunit of the yeast omatin Assembly Factor-I (CAF-I)

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

```
YPR120C	CLB5	B-type cyclin
```

late_g1: -301 to -203 nt upstream of the ATG start codon: 22 genes

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL124W		
```
```
YGL089C	MF(ALPHA)2	alpha mating factor
```

YGR152C	RSR1	GTP-binding protein, ras superfamily

```
YJL187C	SWE1	protein kinase homolog
```

YKL042W	SPC42	component of the spindle pole body

```
YML061C	PIF1	5' to 3' DNA helicase
```

YMR179W	SPT21	non-specific DNA binding protein

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

```
YNL300W		
```
```
YNL310C		
```
```
YPL014W		
```
```
YPL127C	HHO1	histone H1
```

YPL153C	RAD53	protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation

```
YPL209C	IPL1	Protein kinase
```

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

```
YPR174C		
```
```
YLR349W		
```

late_g1: -202 to -104 nt upstream of the ATG start codon: 38 genes

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

```
YDL010W		
```

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL101C	DUN1	protein kinase
```

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

YHR110W	ERP5	p24 protein involved in membrane trafficking

```
YHR153C	SPO16	sporulation protein
```
```
YHR154W	ESC4	involved in silencing
```

YIL026C	IRR1	involved in cell morphology

YIL159W	BNR1	involved in actin filament organization

YJL074C	SMC3	involved in sister chromatid cohesion

YJL173C	RFA3	subunit 3 of replication factor-A

```
YJL181W		
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

```
YKR077W		
```

YLR032W	RAD5	putative ATPase/DNA helicase

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR121C	YPS4	GPI-anchored aspartic protease

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

```
YLR381W		
```

YLR383W	RHC18	involved in recombination repair

```
YLR457C	NBP1	Nap1p binding protein
```

YML060W	OGG1	43-kDa 8-oxo-guanine DNA glycosylase

YML102W	CAC2	p60 subunit of the yeast omatin Assembly Factor-I (CAF-I)

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL273W	TOF1	Interacts with topoisomerase I

```
YOR074C	CDC21	Thymidylate synthase
```
```
YOR144C		
```
```
YPL127C	HHO1	histone H1
```
```
YPL267W		
```
```
YPR174C		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

late_g1: -103 to -5 nt upstream of the ATG start codon: 10 genes

```
YDR383C		
```

YFL008W	SMC1	omosome segregation protein

```
YGL027C	CWH41	glucosidase I
```

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YML060W	OGG1	43-kDa 8-oxo-guanine DNA glycosylase

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL309W	STB1	Interacts with the putative transcription factor Sin3p

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

YPL241C	CIN2	involved in microtubule function

YPR175W	DPB2	DNA polymerase epsilon, subunit B

s: -598 to -500 nt upstream of the ATG start codon: 5 genes

YCR065W	HCM1	Transcription factor (fork head domain)

```
YDR219C		
```

YNL073W	MSK1	mitochondrial lysine-tRNA synthetase

YOR026W	BUB3	cell cycle checkpoint protein

YPL016W	SWI1	Zinc-finger transcription factor

s: -499 to -401 nt upstream of the ATG start codon: 3 genes

```
YBR007C		
```
```
YLR151C		
```
```
YOL019W		
```

s: -400 to -302 nt upstream of the ATG start codon: 6 genes

YCR065W	HCM1	Transcription factor (fork head domain)

```
YDL096C		
```
```
YEL017W		
```

YEL061C	CIN8	kinesin-related protein involved in establishment and maintenance of mitotic spindle

```
YER019W		
```

YIL140W	SRO4	localizes to the plasma membrane

s: -301 to -203 nt upstream of the ATG start codon: 7 genes

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

YCR065W	HCM1	Transcription factor (fork head domain)

YER016W	BIM1	microtubule-binding protein

YFR037C	RSC8	chromatin remodeling complex subunit

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

```
YJL115W	ASF1	involved in silencing
```
```
YOL019W		
```

s: -202 to -104 nt upstream of the ATG start codon: 12 genes

```
YDL096C		
```

YDL197C	ASF2	Anti-silencing protein, involved in transcription

```
YDR113C	PDS1	42-kDa nuclear protein
```

YER003C	PMI40	mannose-6-phosphate isomerase

```
YER019W		
```

YJR006W	HYS2	DNA polymerase delta 55 KD subunit

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

YLR228C	ECM22	involved in cell wall biogenesis (putative)

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

```
YOR284W		
```

s: -103 to -5 nt upstream of the ATG start codon: 1 genes

```
YMR048W		
```

g2: -598 to -500 nt upstream of the ATG start codon: 3 genes

```
YLL046C	RNP1	ribonucleoprotein 1
```

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

```
YMR003W		
```

g2: -499 to -401 nt upstream of the ATG start codon: 0 genes

g2: -400 to -302 nt upstream of the ATG start codon: 3 genes

```
YBL032W		
```
```
YDR451C		
```

YER069W	ARG5,6	N-acetyl-gamma-glutamyl-phosphate reductase and acetylglutamate kinase

g2: -301 to -203 nt upstream of the ATG start codon: 7 genes

```
YCR086W		
```
```
YDR451C		
```
```
YJL092W	HPR5	DNA helicase
```
```
YKL052C		
```
```
YLL046C	RNP1	ribonucleoprotein 1
```
```
YNR009W		
```
```
YPL264C		
```

g2: -202 to -104 nt upstream of the ATG start codon: 2 genes

```
YDR451C		
```
```
YOR073W		
```

g2: -103 to -5 nt upstream of the ATG start codon: 1 genes

```
YBL032W		
```

m: -598 to -500 nt upstream of the ATG start codon: 0 genes

m: -499 to -401 nt upstream of the ATG start codon: 4 genes

YCL037C	SRO9	involved in actin filament organization

YGL021W	ALK1	DNA damage-responsive protein

YLR353W	BUD8	involved in bud site selection

```
YNL057W		
```

m: -400 to -302 nt upstream of the ATG start codon: 1 genes

YCL037C	SRO9	involved in actin filament organization

m: -301 to -203 nt upstream of the ATG start codon: 1 genes

```
YOR229W	WTM2	Transcriptional modulator
```

m: -202 to -104 nt upstream of the ATG start codon: 1 genes

```
YDL138W	RGT2	glucose permease
```

m: -103 to -5 nt upstream of the ATG start codon: 0 genes

From Table IIa: Position-dependent, orientation-independent pentamers GACGC and/or GCGTC are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIa: Position-dependent, orientation-independent pentamers
GACGC and/or GCGTC
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: