Position dependent CGAAA

From Table IIa: Position-dependent, orientation-independent pentamers
CGAAA and/or TTTCG
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 7 genes

YBR054W	YRO2	Homolog to HSP30 heat shock protein YRO1 (S. cerevisiae) 7

```
YBR200W	BEM1	contains two SH3 domains
```
```
YDL117W		
```
```
YGR035C		
```
```
YIL009W	FAA3	Acyl CoA synthase
```

YLL040C	VPS13	component of peripheral vacuolar membrane protein complex

```
YPL158C		
```

early_g1: -499 to -401 nt upstream of the ATG start codon: 15 genes

YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

```
YBR053C		
```

YBR054W	YRO2	Homolog to HSP30 heat shock protein YRO1 (S. cerevisiae) 7

```
YCL040W	GLK1	Glucokinase
```
```
YER111C	SWI4	transcription factor
```

YGL055W	OLE1	delta-9-fatty acid desaturase

```
YHL026C		
```
```
YLR254C		
```

YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

YLR273C	PIG1	Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit

```
YNR016C	ACC1	acetyl-CoA carboxylase
```
```
YOR066W		
```
```
YOR264W		
```

YPL058C	PDR12	multidrug resistance transporter

```
YPL158C		
```

early_g1: -400 to -302 nt upstream of the ATG start codon: 15 genes

```
YBR053C		
```
```
YBR157C		
```
```
YBR158W		
```
```
YCL040W	GLK1	Glucokinase
```
```
YDR033W		
```

YEL032W	MCM3	component of DNA replication initiator complex

YGL055W	OLE1	delta-9-fatty acid desaturase

YHR005C	GPA1	alpha subunit of G protein coupled to mating factor receptors

```
YIL009W	FAA3	Acyl CoA synthase
```

YJL194W	CDC6	pre-initiation complex component

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YLR050C		
```
```
YMR007W		
```
```
YNR067C		
```
```
YOR264W		
```

early_g1: -301 to -203 nt upstream of the ATG start codon: 18 genes

YBR054W	YRO2	Homolog to HSP30 heat shock protein YRO1 (S. cerevisiae) 7

```
YBR200W	BEM1	contains two SH3 domains
```

YBR202W	CDC47	MCM3 protein homolog (S. cerevisiae)

```
YCL040W	GLK1	Glucokinase
```
```
YER111C	SWI4	transcription factor
```
```
YGR035C		
```
```
YJL157C	FAR1	Cdc28p kinase inhibitor
```

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

YKL163W	PIR3	Protein containing tandem internal repeats

YKL185W	ASH1	probable purine nucleotide-binding protein

YLL040C	VPS13	component of peripheral vacuolar membrane protein complex

```
YLR049C		
```

YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

```
YMR254C		
```
```
YNR067C		
```
```
YPL004C		
```
```
YPL158C		
```
```
YPR002W		
```

early_g1: -202 to -104 nt upstream of the ATG start codon: 15 genes

YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

YBR202W	CDC47	MCM3 protein homolog (S. cerevisiae)

```
YBR231C		
```
```
YDR511W		
```

YEL032W	MCM3	component of DNA replication initiator complex

YGR044C	RME1	zinc finger protein; negative regulator of meiosis; directly repressed by a1-a2 regulator

YGR183C	QCR9	7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex

```
YIL009W	FAA3	Acyl CoA synthase
```

YKL185W	ASH1	probable purine nucleotide-binding protein

```
YLR049C		
```

YLR274W	CDC46	MCM initiator complex protein

```
YMR007W		
```
```
YNL046W		
```
```
YOR066W		
```

YPR019W	CDC54	Involved in initiation of DNA replication

early_g1: -103 to -5 nt upstream of the ATG start codon: 13 genes

```
YBR053C		
```
```
YBR067C	TIP1	cell wall mannoprotein
```
```
YBR231C		
```
```
YDL117W		
```
```
YDL179W	PCL9	Cyclin
```
```
YER111C	SWI4	transcription factor
```

YGR183C	QCR9	7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex

```
YHL026C		
```

YLR079W	SIC1	Cdc28p-Clb5 protein kinase inhibitor

```
YLR254C		
```
```
YNL046W		
```
```
YNR016C	ACC1	acetyl-CoA carboxylase
```
```
YPL004C		
```

late_g1: -598 to -500 nt upstream of the ATG start codon: 35 genes

```
YBR071W		
```
```
YDL156W		
```

YDL227C	HO	Homothallic switching endonuclease

```
YDR013W		
```

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

```
YER070W	RNR1	ribonucleotide reductase
```
```
YGL028C	SCW11	soluble cell wall protein
```
```
YGL089C	MF(ALPHA)2	alpha mating factor
```

YGR152C	RSR1	GTP-binding protein, ras superfamily

YGR238C	KEL2	involved in cell fusion and morphology; contains six Kelch repeats

YHR110W	ERP5	p24 protein involved in membrane trafficking

```
YHR153C	SPO16	sporulation protein
```

YIL026C	IRR1	involved in cell morphology

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL108W	SLD2	Synthetically lethal with dpb11-1; required for DNA replication

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

YLR032W	RAD5	putative ATPase/DNA helicase

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

```
YLR326W		
```

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

```
YPL014W		
```

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

YPL124W	NIP29	spindle pole body associated protein

```
YPL127C	HHO1	histone H1
```
```
YPL208W		
```

YPL241C	CIN2	involved in microtubule function

```
YPL256C	CLN2	G(sub)1 cyclin
```

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

late_g1: -499 to -401 nt upstream of the ATG start codon: 27 genes

```
YBR071W		
```
```
YBR089W		
```

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YDL119C		
```
```
YDL164C	CDC9	DNA ligase
```

YDL227C	HO	Homothallic switching endonuclease

```
YGL028C	SCW11	soluble cell wall protein
```
```
YHR153C	SPO16	sporulation protein
```

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YKL108W	SLD2	Synthetically lethal with dpb11-1; required for DNA replication

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

```
YLR376C		
```
```
YLR381W		
```
```
YML061C	PIF1	5' to 3' DNA helicase
```
```
YMR199W	CLN1	G(sub)1 cyclin
```

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

```
YNL300W		
```
```
YNL310C		
```

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

```
YOR144C		
```
```
YCL061C		
```

late_g1: -400 to -302 nt upstream of the ATG start codon: 36 genes

```
YBR070C		involved in osmotolerance
```
```
YBR071W		
```

YBR252W	DUT1	dUTP pyrophosphatase (dUTPase)

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

```
YDL127W	PCL2	G1 cyclin
```

YDL227C	HO	Homothallic switching endonuclease

YDR297W	SUR2	Syringomycin response protein 2

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YDR383C		
```

YDR507C	GIN4	putative serine/threonine kinase

```
YGL027C	CWH41	glucosidase I
```
```
YHR154W	ESC4	involved in silencing
```

YIL026C	IRR1	involved in cell morphology

YJL074C	SMC3	involved in sister chromatid cohesion

```
YJL187C	SWE1	protein kinase homolog
```

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

YKL042W	SPC42	component of the spindle pole body

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

```
YLR183C		
```
```
YML021C	UNG1	uracil DNA glycosylase
```

YMR179W	SPT21	non-specific DNA binding protein

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

```
YNL262W	POL2	DNA polymerase II
```

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

```
YNL300W		
```
```
YNL310C		
```

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

```
YPL014W		
```

YPL153C	RAD53	protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation

```
YPL208W		
```
```
YPL256C	CLN2	G(sub)1 cyclin
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

late_g1: -301 to -203 nt upstream of the ATG start codon: 39 genes

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

```
YDL124W		
```

YDL227C	HO	Homothallic switching endonuclease

```
YDR013W		
```
```
YDR383C		
```

YDR507C	GIN4	putative serine/threonine kinase

```
YER070W	RNR1	ribonucleotide reductase
```
```
YGL028C	SCW11	soluble cell wall protein
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

YGR152C	RSR1	GTP-binding protein, ras superfamily

YGR238C	KEL2	involved in cell fusion and morphology; contains six Kelch repeats

YHR038W	FIL1	Putative mitochondrial ribosome recycling factor

```
YHR154W	ESC4	involved in silencing
```

YIL026C	IRR1	involved in cell morphology

```
YJL018W		
```

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

```
YJL187C	SWE1	protein kinase homolog
```

YKL042W	SPC42	component of the spindle pole body

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

YKL165C	MCD4	(putative) involved in cell polarity

YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

```
YKR083C		
```

YLR121C	YPS4	GPI-anchored aspartic protease

```
YLR183C		
```

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

```
YLR457C	NBP1	Nap1p binding protein
```

YML027W	YOX1	Homeobox-domain containing protein

YMR179W	SPT21	non-specific DNA binding protein

YNL273W	TOF1	Interacts with topoisomerase I

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

```
YNL303W		
```
```
YNL310C		
```

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

YPL241C	CIN2	involved in microtubule function

YPR175W	DPB2	DNA polymerase epsilon, subunit B

```
YLR236C		
```
```
YLR349W		
```

late_g1: -202 to -104 nt upstream of the ATG start codon: 53 genes

```
YBR070C		involved in osmotolerance
```
```
YBR071W		
```

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

```
YCL024W		Ser/Thr protein kinase
```
```
YDL010W		
```

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YDL124W		
```
```
YDL164C	CDC9	DNA ligase
```
```
YDR013W		
```

YDR297W	SUR2	Syringomycin response protein 2

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YDR383C		
```
```
YDR493W		
```
```
YGL027C	CWH41	glucosidase I
```

YGR152C	RSR1	GTP-binding protein, ras superfamily

```
YHR039C		Aldehyde dehydrogenases
```
```
YHR113W		Vacuolar aminopeptidase
```
```
YHR153C	SPO16	sporulation protein
```
```
YHR154W	ESC4	involved in silencing
```

YIL159W	BNR1	involved in actin filament organization

```
YJL181W		
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

YKL042W	SPC42	component of the spindle pole body

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YKL165C	MCD4	(putative) involved in cell polarity

```
YKR077W		
```
```
YKR083C		
```

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

```
YLR183C		
```

YLR233C	EST1	involved in telomere length regulation

```
YLR234W	TOP3	DNA Topoisomerase III
```
```
YLR376C		
```
```
YLR381W		
```
```
YLR457C	NBP1	Nap1p binding protein
```
```
YML021C	UNG1	uracil DNA glycosylase
```

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

```
YNL303W		
```

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

```
YOL017W		
```

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

```
YOR144C		
```

YOR316C	COT1	involved in cobalt accumulation

```
YPL014W		
```

YPL124W	NIP29	spindle pole body associated protein

```
YPL127C	HHO1	histone H1
```
```
YPL267W		
```
```
YPR174C		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

```
YCL061C		
```

late_g1: -103 to -5 nt upstream of the ATG start codon: 29 genes

```
YAR003W		beta transducin domain
```

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

```
YBR070C		involved in osmotolerance
```

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

YBR278W	DPB3	C and C' subunits of DNA polymerase II

```
YDL010W		
```
```
YDR013W		
```

YDR297W	SUR2	Syringomycin response protein 2

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YDR493W		
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

YGR041W	BUD9	involved in bud-site selection

```
YHR153C	SPO16	sporulation protein
```
```
YJL018W		
```

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YJL173C	RFA3	subunit 3 of replication factor-A

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YKL042W	SPC42	component of the spindle pole body

YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

```
YKR077W		
```

YLL022C	HIF1	interacts with histone acetyltransferase

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL309W	STB1	Interacts with the putative transcription factor Sin3p

```
YNL310C		
```

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

```
YLR236C		
```

s: -598 to -500 nt upstream of the ATG start codon: 15 genes

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

```
YBL063W	KIP1	kinesin related protein
```
```
YBR007C		
```
```
YBR156C		
```

YBR275C	RIF1	RAP1-interacting factor, involved in establishment of repressed chromatin

YDL197C	ASF2	Anti-silencing protein, involved in transcription

```
YDR179C		
```

YER016W	BIM1	microtubule-binding protein

YFR037C	RSC8	chromatin remodeling complex subunit

```
YFR038W		
```

YJR006W	HYS2	DNA polymerase delta 55 KD subunit

YJR137C	ECM17	Putative sulfite reductase

YLL061W	MMP1	High affinity S-methylmethionine permease

```
YLR151C		
```

YPL016W	SWI1	Zinc-finger transcription factor

s: -499 to -401 nt upstream of the ATG start codon: 19 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

YBR276C	PPS1	dual specificity protein phosphatase

```
YBR296C	PHO89	Probable Na+/Pi symporter
```

YCR065W	HCM1	Transcription factor (fork head domain)

```
YDR113C	PDS1	42-kDa nuclear protein
```
```
YDR179C		
```
```
YEL017W		
```

YER001W	MNN1	Alpha-1,3-mannosyltransferase

```
YFR038W		
```

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YIL140W	SRO4	localizes to the plasma membrane

```
YJL115W	ASF1	involved in silencing
```

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

YKR010C	TOF2	topoisomerase I interacting factor 2

```
YLL062C		
```

YLR045C	STU2	spindle pole body component

YLR228C	ECM22	involved in cell wall biogenesis (putative)

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

s: -400 to -302 nt upstream of the ATG start codon: 19 genes

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

```
YBR156C		
```

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

YCR065W	HCM1	Transcription factor (fork head domain)

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YDL096C		
```
```
YDR179C		
```

YER017C	AFG3	ATP-dependent metalloprotease

YIL140W	SRO4	localizes to the plasma membrane

```
YJL115W	ASF1	involved in silencing
```
```
YLL062C		
```

YLR045C	STU2	spindle pole body component

```
YMR048W		
```

YMR190C	SGS1	has DNA helicase signature motifs

YNL073W	MSK1	mitochondrial lysine-tRNA synthetase

```
YNL176C		
```

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

```
YOL019W		
```

s: -301 to -203 nt upstream of the ATG start codon: 13 genes

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

```
YBR156C		
```

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YEL017W		
```
```
YER118C	SSU81	Transmembrane osmosensor
```

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

YKR010C	TOF2	topoisomerase I interacting factor 2

```
YLR455W		
```

YMR190C	SGS1	has DNA helicase signature motifs

YOR026W	BUB3	cell cycle checkpoint protein

```
YOR284W		
```

s: -202 to -104 nt upstream of the ATG start codon: 27 genes

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

```
YBR156C		
```

YBR275C	RIF1	RAP1-interacting factor, involved in establishment of repressed chromatin

YBR276C	PPS1	dual specificity protein phosphatase

```
YBR296C	PHO89	Probable Na+/Pi symporter
```

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YDR179C		
```

YDR488C	PAC11	similar to rat dynein intermediate chain

YEL061C	CIN8	kinesin-related protein involved in establishment and maintenance of mitotic spindle

YER001W	MNN1	Alpha-1,3-mannosyltransferase

YER003C	PMI40	mannose-6-phosphate isomerase

```
YER019W		
```

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YHR172W	SPC97	spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP

YIL126W	STH1	helicase related protein, snf2 homolog

YIR017C	MET28	transcriptional activator in the Cbf1p-Met4p-Met28p complex

```
YKL066W		
```

YKL067W	YNK1	Nucleoside diphosphate kinase

YKR010C	TOF2	topoisomerase I interacting factor 2

YLR045C	STU2	spindle pole body component

YLR228C	ECM22	involved in cell wall biogenesis (putative)

YMR190C	SGS1	has DNA helicase signature motifs

YNL073W	MSK1	mitochondrial lysine-tRNA synthetase

```
YNL176C		
```

YPL016W	SWI1	Zinc-finger transcription factor

s: -103 to -5 nt upstream of the ATG start codon: 24 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

```
YBR007C		
```

YCR065W	HCM1	Transcription factor (fork head domain)

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YDL096C		
```

YDR356W	NUF1	component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein

YDR488C	PAC11	similar to rat dynein intermediate chain

```
YEL017W		
```

YEL061C	CIN8	kinesin-related protein involved in establishment and maintenance of mitotic spindle

YER001W	MNN1	Alpha-1,3-mannosyltransferase

```
YFR026C		
```

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YIL140W	SRO4	localizes to the plasma membrane

```
YJL115W	ASF1	involved in silencing
```
```
YJL118W		
```

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

YLR228C	ECM22	involved in cell wall biogenesis (putative)

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

YNL073W	MSK1	mitochondrial lysine-tRNA synthetase

```
YNL176C		
```

YOR026W	BUB3	cell cycle checkpoint protein

YPL016W	SWI1	Zinc-finger transcription factor

g2: -598 to -500 nt upstream of the ATG start codon: 8 genes

```
YBR043C		
```
```
YCL063W		
```

YDR464W	SPP41	negative regulator of prp genes

YER069W	ARG5,6	N-acetyl-gamma-glutamyl-phosphate reductase and acetylglutamate kinase

```
YGL101W		
```
```
YLR015W		
```
```
YOR273C		
```

YPL116W	HOS3	sequence similar to the histone deacetylase Hda1p

g2: -499 to -401 nt upstream of the ATG start codon: 6 genes

```
YCR085W		
```
```
YIL050W	PCL7	PHO85 cyclin
```

YIL169C		serine-, threonine-rich protein

YKL049C	CSE4	high similarity to histone H3 and to human centromere protein CENP-A

```
YMR003W		
```
```
YPL264C		
```

g2: -400 to -302 nt upstream of the ATG start codon: 11 genes

YCL014W	BUD3	involved in bud site selection

YCR084C	TUP1	glucose repression regulatory protein, exhibits similarity to beta subunits of G proteins

```
YCR085W		
```
```
YDR324C		
```
```
YDR325W		
```
```
YDR366C		
```

YDR389W	SAC7	GTPase activating protein (GAP) for RHO1

```
YDR451C		
```

YIL169C		serine-, threonine-rich protein

```
YLL046C	RNP1	ribonucleoprotein 1
```

YOR188W	MSB1	involved in polarized growth

g2: -301 to -203 nt upstream of the ATG start codon: 17 genes

```
YBL032W		
```

YBL097W	BRN1	involved in chromosome maintenance; similar to Drosophila barren, Xenopus XCAP-H, and human BRRN1

YBR104W	YMC2	mitochondrial carrier protein

```
YCL012W		
```
```
YCL012W		
```

YCR084C	TUP1	glucose repression regulatory protein, exhibits similarity to beta subunits of G proteins

YDL198C	YHM1	(putative) mitochondrial carrier protein

YER069W	ARG5,6	N-acetyl-gamma-glutamyl-phosphate reductase and acetylglutamate kinase

```
YIL050W	PCL7	PHO85 cyclin
```
```
YJL092W	HPR5	DNA helicase
```

YJL099W	CHS6	involved in chitin biosynthesis

YJL137C	GLG2	glycogen synthesis initiator

```
YKL048C	ELM1	protein kinase
```
```
YKL053W		
```
```
YLL047W		
```
```
YNR009W		
```

YOR274W	MOD5	transfer RNA isopentenyl transferase

g2: -202 to -104 nt upstream of the ATG start codon: 18 genes

```
YCL063W		
```
```
YCR073C	SSK22	protein kinase
```
```
YCR085W		
```
```
YDR451C		
```
```
YGL101W		
```

YGL255W	ZRT1	high-affinity zinc transport protein

```
YIL131C	FKH1	
```
```
YIL158W		
```

YJL099W	CHS6	involved in chitin biosynthesis

YJL137C	GLG2	glycogen synthesis initiator

```
YKL053W		
```
```
YMR215W		
```
```
YNR009W		
```

YOL012C	HTA3	An evolutionarily conserved member of the histone H2A F/Z family of histone variants

YOR188W	MSB1	involved in polarized growth

YOR274W	MOD5	transfer RNA isopentenyl transferase

YPL116W	HOS3	sequence similar to the histone deacetylase Hda1p

```
YPL264C		
```

g2: -103 to -5 nt upstream of the ATG start codon: 14 genes

```
YBR038W	CHS2	chitin synthase 2
```

YBR104W	YMC2	mitochondrial carrier protein

```
YCL012W		
```
```
YCL012W		
```
```
YCL063W		
```

YCR084C	TUP1	glucose repression regulatory protein, exhibits similarity to beta subunits of G proteins

```
YCR086W		
```

YDR389W	SAC7	GTPase activating protein (GAP) for RHO1

YIL169C		serine-, threonine-rich protein

YJR076C	CDC11	Component of 10 nm filaments of mother-bud neck

YKL049C	CSE4	high similarity to histone H3 and to human centromere protein CENP-A

YOL012C	HTA3	An evolutionarily conserved member of the histone H2A F/Z family of histone variants

YPL116W	HOS3	sequence similar to the histone deacetylase Hda1p

```
YPL264C		
```

m: -598 to -500 nt upstream of the ATG start codon: 6 genes

YGR230W	BNS1	similar to Spo12, involved in sporulation

```
YIL167W		
```
```
YKR021W		
```
```
YLR190W		
```

YLR353W	BUD8	involved in bud site selection

```
YNL058C		
```

m: -499 to -401 nt upstream of the ATG start codon: 5 genes

YGR143W	SKN1	encodes a predicted type II membrane protein highly homologous to Kre6p

YGR279C	SCW4	soluble cell wall protein; can be released from SDS-extracted cell walls under reducing conditions

```
YOL014W		
```
```
YOL069W	NUF2	53-kDa coiled-coil protein
```
```
YOL137W		
```

m: -400 to -302 nt upstream of the ATG start codon: 12 genes

```
YBR138C	HDR1	Unknown
```
```
YDR146C	SWI5	transcriptional activator
```

YGL021W	ALK1	DNA damage-responsive protein

```
YGL116W	CDC20	beta-transducin homolog
```

YGL201C	MCM6	component of MCM initiator complex involved in DNA replication

YGR279C	SCW4	soluble cell wall protein; can be released from SDS-extracted cell walls under reducing conditions

YIL162W	SUC2	invertase (sucrose hydrolyzing enzyme)

```
YKR021W		
```

YMR001C	CDC5	protein kinase which functions at the G(sub)2/M boundary

YMR032W	HOF1	SH3 domain containing-protein

YNL053W	MSG5	Dual-specificity protein tyrosine phosphatase

YPR119W	CLB2	G(sub)2-specific B-type cyclin

m: -301 to -203 nt upstream of the ATG start codon: 13 genes

YAL022C	FUN26	predicted membrane protein

```
YBR138C	HDR1	Unknown
```
```
YDL048C	STP4	involved in tRNA splicing
```
```
YDL138W	RGT2	glucose permease
```

YGL021W	ALK1	DNA damage-responsive protein

YGR092W	DBF2	Serine/threonine protein kinase

YGR143W	SKN1	encodes a predicted type II membrane protein highly homologous to Kre6p

```
YHR023W	MYO1	Class II Myosin
```

YJL079C	PRY1	Similar to plant PR-1 class of pathogen related proteins

```
YMR031C		
```

YOR058C	ASE1	encodes component of the spindle midzone

```
YOR315W		
```

YPL242C	IQG1	Similar to mammalian IQGAP proteins

m: -202 to -104 nt upstream of the ATG start codon: 7 genes

YAL022C	FUN26	predicted membrane protein

```
YCL038C		Membrane transporter
```

YGR230W	BNS1	similar to Spo12, involved in sporulation

YJL079C	PRY1	Similar to plant PR-1 class of pathogen related proteins

```
YKL129C	MYO3	myosin I
```
```
YKR021W		
```
```
YLR190W		
```

m: -103 to -5 nt upstream of the ATG start codon: 7 genes

```
YBR138C	HDR1	Unknown
```

YCL037C	SRO9	involved in actin filament organization

```
YDR146C	SWI5	transcriptional activator
```

YGR108W	CLB1	G(sub)2-specific B-type cyclin

YGR279C	SCW4	soluble cell wall protein; can be released from SDS-extracted cell walls under reducing conditions

YLR353W	BUD8	involved in bud site selection

```
YML033W		
```

From Table IIa: Position-dependent, orientation-independent pentamers CGAAA and/or TTTCG are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIa: Position-dependent, orientation-independent pentamers
CGAAA and/or TTTCG
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: