Position dependent CCGCG

From Table IIa: Position-dependent, orientation-independent pentamers
CCGCG and/or CGCGG
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 3 genes

```
YER111C	SWI4	transcription factor
```

YML110C	COQ5	Putative mitochondrial C-methyltransferase

YNR001C	CIT1	citrate synthase. Nuclear encoded mitochondrial protein.

early_g1: -499 to -401 nt upstream of the ATG start codon: 5 genes

YBR083W	TEC1	transcription factor of the TEA/ATTS DNA-binding domain family, regulator of Ty1 expression

```
YGR035C		
```
```
YGR281W	YOR1	ABC transporter
```

YJL194W	CDC6	pre-initiation complex component

```
YOR066W		
```

early_g1: -400 to -302 nt upstream of the ATG start codon: 5 genes

```
YDL179W	PCL9	Cyclin
```
```
YGR035C		
```

YKL163W	PIR3	Protein containing tandem internal repeats

YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

```
YNL046W		
```

early_g1: -301 to -203 nt upstream of the ATG start codon: 7 genes

```
YBR231C		
```
```
YCL040W	GLK1	Glucokinase
```
```
YDL181W	INH1	ATPase inhibitor
```

YEL032W	MCM3	component of DNA replication initiator complex

```
YGR035C		
```
```
YNL078W		
```
```
YOR264W		
```

early_g1: -202 to -104 nt upstream of the ATG start codon: 5 genes

YGR183C	QCR9	7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex

```
YGR281W	YOR1	ABC transporter
```

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YML109W	ZDS2	Zds1 homolog
```

YMR256C	COX7	subunit VII of cytochrome c oxidase

early_g1: -103 to -5 nt upstream of the ATG start codon: 0 genes

late_g1: -598 to -500 nt upstream of the ATG start codon: 3 genes

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YMR199W	CLN1	G(sub)1 cyclin
```

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

late_g1: -499 to -401 nt upstream of the ATG start codon: 3 genes

```
YDL010W		
```
```
YNL300W		
```
```
YPL014W		
```

late_g1: -400 to -302 nt upstream of the ATG start codon: 8 genes

YDR297W	SUR2	Syringomycin response protein 2

YHR038W	FIL1	Putative mitochondrial ribosome recycling factor

YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

YLR121C	YPS4	GPI-anchored aspartic protease

```
YLR376C		
```

YLR383W	RHC18	involved in recombination repair

YML027W	YOX1	Homeobox-domain containing protein

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

late_g1: -301 to -203 nt upstream of the ATG start codon: 6 genes

```
YDL124W		
```

YDL227C	HO	Homothallic switching endonuclease

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

```
YPR120C	CLB5	B-type cyclin
```

late_g1: -202 to -104 nt upstream of the ATG start codon: 4 genes

```
YJL196C	ELO1	Elongation enzyme 1
```

YKL045W	PRI2	p58 polypeptide of DNA primase

YLR121C	YPS4	GPI-anchored aspartic protease

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

late_g1: -103 to -5 nt upstream of the ATG start codon: 0 genes

s: -598 to -500 nt upstream of the ATG start codon: 0 genes

s: -499 to -401 nt upstream of the ATG start codon: 2 genes

```
YBL063W	KIP1	kinesin related protein
```
```
YEL017W		
```

s: -400 to -302 nt upstream of the ATG start codon: 4 genes

```
YEL017W		
```

YER003C	PMI40	mannose-6-phosphate isomerase

```
YER118C	SSU81	Transmembrane osmosensor
```

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

s: -301 to -203 nt upstream of the ATG start codon: 4 genes

```
YBL063W	KIP1	kinesin related protein
```

YER017C	AFG3	ATP-dependent metalloprotease

```
YFR026C		
```

YFR037C	RSC8	chromatin remodeling complex subunit

s: -202 to -104 nt upstream of the ATG start codon: 7 genes

```
YBR156C		
```

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

YER003C	PMI40	mannose-6-phosphate isomerase

YER017C	AFG3	ATP-dependent metalloprotease

```
YER018C	SPC25	component of spindle pole
```

YHR172W	SPC97	spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP

YNL073W	MSK1	mitochondrial lysine-tRNA synthetase

s: -103 to -5 nt upstream of the ATG start codon: 4 genes

YDR356W	NUF1	component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein

```
YER019W		
```
```
YLR151C		
```

YOR026W	BUB3	cell cycle checkpoint protein

g2: -598 to -500 nt upstream of the ATG start codon: 2 genes

```
YCR073C	SSK22	protein kinase
```

YJL137C	GLG2	glycogen synthesis initiator

g2: -499 to -401 nt upstream of the ATG start codon: 5 genes

YDR389W	SAC7	GTPase activating protein (GAP) for RHO1

YKL049C	CSE4	high similarity to histone H3 and to human centromere protein CENP-A

```
YKL052C		
```
```
YNR009W		
```

YOR274W	MOD5	transfer RNA isopentenyl transferase

g2: -400 to -302 nt upstream of the ATG start codon: 1 genes

```
YDR324C		
```

g2: -301 to -203 nt upstream of the ATG start codon: 4 genes

YBR104W	YMC2	mitochondrial carrier protein

```
YKL052C		
```
```
YLL046C	RNP1	ribonucleoprotein 1
```

YOL012C	HTA3	An evolutionarily conserved member of the histone H2A F/Z family of histone variants

g2: -202 to -104 nt upstream of the ATG start codon: 6 genes

```
YCL063W		
```
```
YCR073C	SSK22	protein kinase
```

YJL137C	GLG2	glycogen synthesis initiator

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

```
YLR015W		
```
```
YMR003W		
```

g2: -103 to -5 nt upstream of the ATG start codon: 0 genes

m: -598 to -500 nt upstream of the ATG start codon: 2 genes

YCL037C	SRO9	involved in actin filament organization

```
YPR157W		
```

m: -499 to -401 nt upstream of the ATG start codon: 1 genes

YCL037C	SRO9	involved in actin filament organization

m: -400 to -302 nt upstream of the ATG start codon: 4 genes

```
YDL138W	RGT2	glucose permease
```

YHL028W	WSC4	Putative integral membrane protein containing novel cysteine motif. Similarity to SLG1 (WSC1), WSC2 and WSC3

```
YKL129C	MYO3	myosin I
```
```
YOL014W		
```

m: -301 to -203 nt upstream of the ATG start codon: 0 genes

m: -202 to -104 nt upstream of the ATG start codon: 0 genes

m: -103 to -5 nt upstream of the ATG start codon: 2 genes

```
YKL129C	MYO3	myosin I
```
```
YML034W		
```

From Table IIa: Position-dependent, orientation-independent pentamers CCGCG and/or CGCGG are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIa: Position-dependent, orientation-independent pentamers
CCGCG and/or CGCGG
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: