Position dependent CCCTT

From Table IIb: Position-dependent, orientation-dependent pentamers
CCCTT
is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 3 genes

```
YBR231C		
```
```
YMR254C		
```

YPL058C	PDR12	multidrug resistance transporter

early_g1: -499 to -401 nt upstream of the ATG start codon: 9 genes

```
YBR067C	TIP1	cell wall mannoprotein
```
```
YBR231C		
```

YHR005C	GPA1	alpha subunit of G protein coupled to mating factor receptors

```
YHR022C		RAS-related protein
```

YJL194W	CDC6	pre-initiation complex component

YKL150W	MCR1	NADH-cytochrome b5 reductase

YLR079W	SIC1	Cdc28p-Clb5 protein kinase inhibitor

```
YNR016C	ACC1	acetyl-CoA carboxylase
```
```
YPL066W		
```

early_g1: -400 to -302 nt upstream of the ATG start codon: 12 genes

```
YBR053C		
```

YBR054W	YRO2	Homolog to HSP30 heat shock protein YRO1 (S. cerevisiae) 7

```
YBR067C	TIP1	cell wall mannoprotein
```
```
YBR158W		
```

YBR202W	CDC47	MCM3 protein homolog (S. cerevisiae)

```
YDR033W		
```
```
YGR035C		
```

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

YLR274W	CDC46	MCM initiator complex protein

YMR256C	COX7	subunit VII of cytochrome c oxidase

```
YNR067C		
```
```
YPL158C		
```

early_g1: -301 to -203 nt upstream of the ATG start codon: 8 genes

```
YDR511W		
```

YEL032W	MCM3	component of DNA replication initiator complex

```
YGR281W	YOR1	ABC transporter
```

YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

```
YMR007W		
```

YNR001C	CIT1	citrate synthase. Nuclear encoded mitochondrial protein.

```
YNR016C	ACC1	acetyl-CoA carboxylase
```
```
YOR066W		
```

early_g1: -202 to -104 nt upstream of the ATG start codon: 15 genes

YBR054W	YRO2	Homolog to HSP30 heat shock protein YRO1 (S. cerevisiae) 7

YBR083W	TEC1	transcription factor of the TEA/ATTS DNA-binding domain family, regulator of Ty1 expression

```
YBR157C		
```
```
YBR158W		
```
```
YCL040W	GLK1	Glucokinase
```
```
YER111C	SWI4	transcription factor
```
```
YGR035C		
```
```
YHL026C		
```

YKL150W	MCR1	NADH-cytochrome b5 reductase

```
YLR049C		
```

YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

YLR274W	CDC46	MCM initiator complex protein

YNR001C	CIT1	citrate synthase. Nuclear encoded mitochondrial protein.

```
YNR016C	ACC1	acetyl-CoA carboxylase
```
```
YPL004C		
```

early_g1: -103 to -5 nt upstream of the ATG start codon: 5 genes

```
YBR157C		
```
```
YBR158W		
```

YDR368W	YPR1	similar to aldo-keto reductase

```
YER111C	SWI4	transcription factor
```

YLR079W	SIC1	Cdc28p-Clb5 protein kinase inhibitor

late_g1: -598 to -500 nt upstream of the ATG start codon: 7 genes

```
YCL024W		Ser/Thr protein kinase
```
```
YDL164C	CDC9	DNA ligase
```

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

```
YLR286C	CTS1	Endochitinase
```

YLR383W	RHC18	involved in recombination repair

```
YPL208W		
```

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

late_g1: -499 to -401 nt upstream of the ATG start codon: 13 genes

```
YBR071W		
```
```
YDL164C	CDC9	DNA ligase
```

YGR238C	KEL2	involved in cell fusion and morphology; contains six Kelch repeats

YIL159W	BNR1	involved in actin filament organization

YLR121C	YPS4	GPI-anchored aspartic protease

```
YLR183C		
```
```
YLR376C		
```

YML027W	YOX1	Homeobox-domain containing protein

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

```
YOR074C	CDC21	Thymidylate synthase
```
```
YPL256C	CLN2	G(sub)1 cyclin
```
```
YPR174C		
```

late_g1: -400 to -302 nt upstream of the ATG start codon: 8 genes

```
YDL156W		
```
```
YDR013W		
```
```
YDR493W		
```
```
YHR113W		Vacuolar aminopeptidase
```
```
YKR077W		
```

YLR233C	EST1	involved in telomere length regulation

```
YPL209C	IPL1	Protein kinase
```
```
YPR120C	CLB5	B-type cyclin
```

late_g1: -301 to -203 nt upstream of the ATG start codon: 6 genes

YBR278W	DPB3	C and C' subunits of DNA polymerase II

YJL074C	SMC3	involved in sister chromatid cohesion

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

```
YLR183C		
```

YNL173C	MDG1	Involved in G-protein mediated signal transduction

```
YPL208W		
```

late_g1: -202 to -104 nt upstream of the ATG start codon: 6 genes

```
YCL022C		
```
```
YDL124W		
```

YIL159W	BNR1	involved in actin filament organization

YLR032W	RAD5	putative ATPase/DNA helicase

YNL273W	TOF1	Interacts with topoisomerase I

```
YPL014W		
```

late_g1: -103 to -5 nt upstream of the ATG start codon: 11 genes

```
YBR089W		
```
```
YDL101C	DUN1	protein kinase
```
```
YDL156W		
```

YDR297W	SUR2	Syringomycin response protein 2

YGR238C	KEL2	involved in cell fusion and morphology; contains six Kelch repeats

YJL173C	RFA3	subunit 3 of replication factor-A

```
YJL181W		
```
```
YLR381W		
```

YML027W	YOX1	Homeobox-domain containing protein

YNL309W	STB1	Interacts with the putative transcription factor Sin3p

```
YPL014W		
```

s: -598 to -500 nt upstream of the ATG start codon: 5 genes

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

YER003C	PMI40	mannose-6-phosphate isomerase

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

s: -499 to -401 nt upstream of the ATG start codon: 3 genes

```
YBR296C	PHO89	Probable Na+/Pi symporter
```
```
YDR179C		
```

YKL067W	YNK1	Nucleoside diphosphate kinase

s: -400 to -302 nt upstream of the ATG start codon: 3 genes

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

```
YER118C	SSU81	Transmembrane osmosensor
```

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

s: -301 to -203 nt upstream of the ATG start codon: 8 genes

YBR276C	PPS1	dual specificity protein phosphatase

YCR065W	HCM1	Transcription factor (fork head domain)

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

YDR252W	BTT1	negative regulator of RNA polymerase II

YHR172W	SPC97	spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP

YLR228C	ECM22	involved in cell wall biogenesis (putative)

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

s: -202 to -104 nt upstream of the ATG start codon: 7 genes

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

YCR065W	HCM1	Transcription factor (fork head domain)

```
YDL094C		
```
```
YER018C	SPC25	component of spindle pole
```
```
YFR038W		
```
```
YJL115W	ASF1	involved in silencing
```

YOR026W	BUB3	cell cycle checkpoint protein

s: -103 to -5 nt upstream of the ATG start codon: 2 genes

YJR137C	ECM17	Putative sulfite reductase

```
YLR455W		
```

g2: -598 to -500 nt upstream of the ATG start codon: 7 genes

```
YBR038W	CHS2	chitin synthase 2
```
```
YCR073C	SSK22	protein kinase
```
```
YDR451C		
```

YGL255W	ZRT1	high-affinity zinc transport protein

```
YIL131C	FKH1	
```

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

```
YPL264C		
```

g2: -499 to -401 nt upstream of the ATG start codon: 6 genes

```
YBR038W	CHS2	chitin synthase 2
```

YCR084C	TUP1	glucose repression regulatory protein, exhibits similarity to beta subunits of G proteins

```
YKL048C	ELM1	protein kinase
```
```
YKL052C		
```
```
YOR073W		
```

YPL116W	HOS3	sequence similar to the histone deacetylase Hda1p

g2: -400 to -302 nt upstream of the ATG start codon: 7 genes

```
YBR043C		
```
```
YDR366C		
```

YJR076C	CDC11	Component of 10 nm filaments of mother-bud neck

```
YLL047W		
```

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

```
YNR009W		
```

YPL116W	HOS3	sequence similar to the histone deacetylase Hda1p

g2: -301 to -203 nt upstream of the ATG start codon: 7 genes

```
YBL032W		
```
```
YCL063W		
```
```
YDR324C		
```
```
YKL052C		
```
```
YKL053W		
```
```
YOR073W		
```
```
YPL264C		
```

g2: -202 to -104 nt upstream of the ATG start codon: 3 genes

```
YBR038W	CHS2	chitin synthase 2
```
```
YIL158W		
```
```
YOR073W		
```

g2: -103 to -5 nt upstream of the ATG start codon: 2 genes

YJL099W	CHS6	involved in chitin biosynthesis

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

m: -598 to -500 nt upstream of the ATG start codon: 2 genes

```
YLR190W		
```

YPR167C	MET16	3'phosphoadenylylsulfate reductase

m: -499 to -401 nt upstream of the ATG start codon: 4 genes

```
YDL048C	STP4	involved in tRNA splicing
```

YGR143W	SKN1	encodes a predicted type II membrane protein highly homologous to Kre6p

YLR131C	ACE2	zinc finger transcription factor

YNL053W	MSG5	Dual-specificity protein tyrosine phosphatase

m: -400 to -302 nt upstream of the ATG start codon: 12 genes

```
YDL048C	STP4	involved in tRNA splicing
```

YGL201C	MCM6	component of MCM initiator complex involved in DNA replication

YGR279C	SCW4	soluble cell wall protein; can be released from SDS-extracted cell walls under reducing conditions

YHL028W	WSC4	Putative integral membrane protein containing novel cysteine motif. Similarity to SLG1 (WSC1), WSC2 and WSC3

```
YHR023W	MYO1	Class II Myosin
```
```
YJL051W		
```

YMR032W	HOF1	SH3 domain containing-protein

```
YOL014W		
```
```
YOL137W		
```
```
YOR229W	WTM2	Transcriptional modulator
```
```
YPL186C		
```

YPL242C	IQG1	Similar to mammalian IQGAP proteins

m: -301 to -203 nt upstream of the ATG start codon: 11 genes

```
YDL138W	RGT2	glucose permease
```

YGR092W	DBF2	Serine/threonine protein kinase

YHL028W	WSC4	Putative integral membrane protein containing novel cysteine motif. Similarity to SLG1 (WSC1), WSC2 and WSC3

```
YHR151C		
```

YJR092W	BUD4	involved in bud site selection

```
YKL129C	MYO3	myosin I
```
```
YKL130C	SHE2	involved in cell polarity
```
```
YML034W		
```

YMR032W	HOF1	SH3 domain containing-protein

```
YNL058C		
```
```
YPR157W		
```

m: -202 to -104 nt upstream of the ATG start codon: 5 genes

YCL037C	SRO9	involved in actin filament organization

YGL021W	ALK1	DNA damage-responsive protein

YGR279C	SCW4	soluble cell wall protein; can be released from SDS-extracted cell walls under reducing conditions

YLR131C	ACE2	zinc finger transcription factor

```
YOR229W	WTM2	Transcriptional modulator
```

m: -103 to -5 nt upstream of the ATG start codon: 6 genes

```
YAL040C	CLN3	G(sub)1 cyclin
```
```
YCL038C		Membrane transporter
```

YGL021W	ALK1	DNA damage-responsive protein

```
YHR151C		
```
```
YJL051W		
```
```
YOL069W	NUF2	53-kDa coiled-coil protein
```

From Table IIb: Position-dependent, orientation-dependent pentamers CCCTT is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIb: Position-dependent, orientation-dependent pentamers
CCCTT
is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: