Position dependent ACGCG

From Table IIa: Position-dependent, orientation-independent pentamers
ACGCG and/or CGCGT
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 6 genes

```
YCL040W	GLK1	Glucokinase
```
```
YER111C	SWI4	transcription factor
```

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YLR254C		
```

YML110C	COQ5	Putative mitochondrial C-methyltransferase

YNR001C	CIT1	citrate synthase. Nuclear encoded mitochondrial protein.

early_g1: -499 to -401 nt upstream of the ATG start codon: 7 genes

YBR083W	TEC1	transcription factor of the TEA/ATTS DNA-binding domain family, regulator of Ty1 expression

```
YBR231C		
```
```
YER111C	SWI4	transcription factor
```
```
YGR281W	YOR1	ABC transporter
```

YJL194W	CDC6	pre-initiation complex component

```
YMR007W		
```
```
YOR066W		
```

early_g1: -400 to -302 nt upstream of the ATG start codon: 7 genes

```
YDL181W	INH1	ATPase inhibitor
```

YGR183C	QCR9	7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex

YHR005C	GPA1	alpha subunit of G protein coupled to mating factor receptors

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YLR049C		
```

YLR274W	CDC46	MCM initiator complex protein

```
YNL078W		
```

early_g1: -301 to -203 nt upstream of the ATG start codon: 6 genes

YBL023C	MCM2	Minichromosome maintenance protein, transcription factor

```
YCL040W	GLK1	Glucokinase
```

YJL194W	CDC6	pre-initiation complex component

```
YLR049C		
```

YLR273C	PIG1	Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit

```
YPL066W		
```

early_g1: -202 to -104 nt upstream of the ATG start codon: 5 genes

YGR183C	QCR9	7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex

```
YGR281W	YOR1	ABC transporter
```

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

YLR079W	SIC1	Cdc28p-Clb5 protein kinase inhibitor

```
YML109W	ZDS2	Zds1 homolog
```

early_g1: -103 to -5 nt upstream of the ATG start codon: 1 genes

```
YLR049C		
```

late_g1: -598 to -500 nt upstream of the ATG start codon: 10 genes

```
YDL127W	PCL2	G1 cyclin
```
```
YGL028C	SCW11	soluble cell wall protein
```
```
YHR113W		Vacuolar aminopeptidase
```
```
YHR154W	ESC4	involved in silencing
```

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YLL022C	HIF1	interacts with histone acetyltransferase

```
YLR381W		
```
```
YMR199W	CLN1	G(sub)1 cyclin
```

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

```
YPL256C	CLN2	G(sub)1 cyclin
```

late_g1: -499 to -401 nt upstream of the ATG start codon: 11 genes

```
YDL010W		
```

YDR297W	SUR2	Syringomycin response protein 2

```
YER070W	RNR1	ribonucleotide reductase
```
```
YGR109C	CLB6	B-type cyclin
```

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

```
YLR326W		
```

YML027W	YOX1	Homeobox-domain containing protein

```
YNL300W		
```
```
YPR120C	CLB5	B-type cyclin
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

late_g1: -400 to -302 nt upstream of the ATG start codon: 17 genes

```
YBR071W		
```

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

```
YDL127W	PCL2	G1 cyclin
```

YDR297W	SUR2	Syringomycin response protein 2

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

YDR507C	GIN4	putative serine/threonine kinase

```
YER070W	RNR1	ribonucleotide reductase
```
```
YGR109C	CLB6	B-type cyclin
```
```
YJL187C	SWE1	protein kinase homolog
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YKR077W		
```

YLR382C	NAM2	mitochondrial leucyl tRNA synthetase

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

```
YPR120C	CLB5	B-type cyclin
```

late_g1: -301 to -203 nt upstream of the ATG start codon: 21 genes

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

```
YBR071W		
```

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

YDL018C	ERP3	p24 protein involved in membrane trafficking

YDR507C	GIN4	putative serine/threonine kinase

YGR152C	RSR1	GTP-binding protein, ras superfamily

```
YJL187C	SWE1	protein kinase homolog
```

YKL042W	SPC42	component of the spindle pole body

```
YLR183C		
```
```
YLR381W		
```

YML027W	YOX1	Homeobox-domain containing protein

```
YML061C	PIF1	5' to 3' DNA helicase
```

YMR179W	SPT21	non-specific DNA binding protein

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

```
YNL310C		
```

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

```
YPL014W		
```

YPL153C	RAD53	protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation

YPR018W	RLF2	p90 subunit of yeast omatin Assembly Factor-I (CAF-I)

late_g1: -202 to -104 nt upstream of the ATG start codon: 64 genes

```
YAR003W		beta transducin domain
```

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

```
YBR070C		involved in osmotolerance
```

YBR073W	RDH54	Putative helicase similar to RAD54

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

```
YCL024W		Ser/Thr protein kinase
```
```
YDL010W		
```

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL101C	DUN1	protein kinase
```

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YDL105W	QRI2	
```
```
YDL156W		
```
```
YDL164C	CDC9	DNA ligase
```

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

YFL008W	SMC1	omosome segregation protein

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

YHR110W	ERP5	p24 protein involved in membrane trafficking

```
YHR153C	SPO16	sporulation protein
```
```
YHR154W	ESC4	involved in silencing
```

YIL026C	IRR1	involved in cell morphology

YIL159W	BNR1	involved in actin filament organization

YJL074C	SMC3	involved in sister chromatid cohesion

YJL173C	RFA3	subunit 3 of replication factor-A

```
YJL181W		
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YKL045W	PRI2	p58 polypeptide of DNA primase

YKL108W	SLD2	Synthetically lethal with dpb11-1; required for DNA replication

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YKL165C	MCD4	(putative) involved in cell polarity

```
YKR077W		
```
```
YKR083C		
```

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLR032W	RAD5	putative ATPase/DNA helicase

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

YLR233C	EST1	involved in telomere length regulation

```
YLR234W	TOP3	DNA Topoisomerase III
```

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

```
YLR376C		
```
```
YLR381W		
```

YLR383W	RHC18	involved in recombination repair

```
YLR457C	NBP1	Nap1p binding protein
```

YML060W	OGG1	43-kDa 8-oxo-guanine DNA glycosylase

YMR078C	CTF18	(putative) involved in chromosome transmission during mitosis

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

```
YNL262W	POL2	DNA polymerase II
```

YNL273W	TOF1	Interacts with topoisomerase I

YNL309W	STB1	Interacts with the putative transcription factor Sin3p

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

```
YOL017W		
```

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

```
YOR074C	CDC21	Thymidylate synthase
```
```
YOR144C		
```

YPL124W	NIP29	spindle pole body associated protein

```
YPL127C	HHO1	histone H1
```
```
YPL209C	IPL1	Protein kinase
```
```
YPL267W		
```
```
YPR174C		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

late_g1: -103 to -5 nt upstream of the ATG start codon: 17 genes

YBR073W	RDH54	Putative helicase similar to RAD54

YBR252W	DUT1	dUTP pyrophosphatase (dUTPase)

YBR278W	DPB3	C and C' subunits of DNA polymerase II

```
YDR013W		
```
```
YDR383C		
```
```
YGL027C	CWH41	glucosidase I
```
```
YHR153C	SPO16	sporulation protein
```

YJL173C	RFA3	subunit 3 of replication factor-A

```
YJL181W		
```

YLL022C	HIF1	interacts with histone acetyltransferase

```
YML021C	UNG1	uracil DNA glycosylase
```

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

YNL309W	STB1	Interacts with the putative transcription factor Sin3p

```
YNL310C		
```
```
YPL208W		
```

YPL241C	CIN2	involved in microtubule function

```
YPR120C	CLB5	B-type cyclin
```

s: -598 to -500 nt upstream of the ATG start codon: 3 genes

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

YER003C	PMI40	mannose-6-phosphate isomerase

```
YER019W		
```

s: -499 to -401 nt upstream of the ATG start codon: 5 genes

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

```
YBR007C		
```

YER017C	AFG3	ATP-dependent metalloprotease

```
YOL019W		
```

s: -400 to -302 nt upstream of the ATG start codon: 10 genes

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

```
YBR007C		
```

YCR065W	HCM1	Transcription factor (fork head domain)

YER001W	MNN1	Alpha-1,3-mannosyltransferase

```
YER118C	SSU81	Transmembrane osmosensor
```

YIL140W	SRO4	localizes to the plasma membrane

YLR228C	ECM22	involved in cell wall biogenesis (putative)

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

```
YOL019W		
```

s: -301 to -203 nt upstream of the ATG start codon: 12 genes

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

YCR065W	HCM1	Transcription factor (fork head domain)

YDR252W	BTT1	negative regulator of RNA polymerase II

```
YER019W		
```
```
YER118C	SSU81	Transmembrane osmosensor
```

YFR037C	RSC8	chromatin remodeling complex subunit

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

```
YJL115W	ASF1	involved in silencing
```

YKL067W	YNK1	Nucleoside diphosphate kinase

YOR026W	BUB3	cell cycle checkpoint protein

s: -202 to -104 nt upstream of the ATG start codon: 19 genes

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

```
YBR156C		
```

YBR276C	PPS1	dual specificity protein phosphatase

YDL197C	ASF2	Anti-silencing protein, involved in transcription

```
YDR113C	PDS1	42-kDa nuclear protein
```
```
YDR179C		
```

YDR356W	NUF1	component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein

YER003C	PMI40	mannose-6-phosphate isomerase

YER016W	BIM1	microtubule-binding protein

```
YER018C	SPC25	component of spindle pole
```

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

```
YJL115W	ASF1	involved in silencing
```

YJR006W	HYS2	DNA polymerase delta 55 KD subunit

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

```
YLR126C		
```
```
YLR151C		
```

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

```
YOR284W		
```

YPL016W	SWI1	Zinc-finger transcription factor

s: -103 to -5 nt upstream of the ATG start codon: 8 genes

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

YEL061C	CIN8	kinesin-related protein involved in establishment and maintenance of mitotic spindle

```
YER019W		
```

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

```
YJL118W		
```
```
YLR151C		
```
```
YMR048W		
```

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

g2: -598 to -500 nt upstream of the ATG start codon: 2 genes

```
YBR038W	CHS2	chitin synthase 2
```
```
YMR003W		
```

g2: -499 to -401 nt upstream of the ATG start codon: 2 genes

```
YCR073C	SSK22	protein kinase
```
```
YIL158W		
```

g2: -400 to -302 nt upstream of the ATG start codon: 1 genes

```
YDR451C		
```

g2: -301 to -203 nt upstream of the ATG start codon: 5 genes

YBL097W	BRN1	involved in chromosome maintenance; similar to Drosophila barren, Xenopus XCAP-H, and human BRRN1

```
YDR451C		
```

YIL169C		serine-, threonine-rich protein

```
YJL092W	HPR5	DNA helicase
```
```
YNR009W		
```

g2: -202 to -104 nt upstream of the ATG start codon: 1 genes

YER069W	ARG5,6	N-acetyl-gamma-glutamyl-phosphate reductase and acetylglutamate kinase

g2: -103 to -5 nt upstream of the ATG start codon: 1 genes

```
YBL032W		
```

m: -598 to -500 nt upstream of the ATG start codon: 2 genes

YCL037C	SRO9	involved in actin filament organization

```
YPR157W		
```

m: -499 to -401 nt upstream of the ATG start codon: 1 genes

YLR353W	BUD8	involved in bud site selection

m: -400 to -302 nt upstream of the ATG start codon: 1 genes

YGR279C	SCW4	soluble cell wall protein; can be released from SDS-extracted cell walls under reducing conditions

m: -301 to -203 nt upstream of the ATG start codon: 0 genes

m: -202 to -104 nt upstream of the ATG start codon: 1 genes

```
YLR190W		
```

m: -103 to -5 nt upstream of the ATG start codon: 2 genes

YIL162W	SUC2	invertase (sucrose hydrolyzing enzyme)

```
YOR315W		
```

From Table IIa: Position-dependent, orientation-independent pentamers ACGCG and/or CGCGT are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIa: Position-dependent, orientation-independent pentamers
ACGCG and/or CGCGT
are found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: