Position dependent ACAAA

From Table IIb: Position-dependent, orientation-dependent pentamers
ACAAA
is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 14 genes

```
YBR067C	TIP1	cell wall mannoprotein
```
```
YBR158W		
```
```
YCL040W	GLK1	Glucokinase
```
```
YDR033W		
```

YDR368W	YPR1	similar to aldo-keto reductase

YGL055W	OLE1	delta-9-fatty acid desaturase

```
YHL026C		
```

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YLR254C		
```

YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

YLR274W	CDC46	MCM initiator complex protein

YLR395C	COX8	Cytochrome-c oxidase chain VIII

YML110C	COQ5	Putative mitochondrial C-methyltransferase

YPR019W	CDC54	Involved in initiation of DNA replication

early_g1: -499 to -401 nt upstream of the ATG start codon: 10 genes

YBR202W	CDC47	MCM3 protein homolog (S. cerevisiae)

```
YCL040W	GLK1	Glucokinase
```
```
YDR033W		
```
```
YER111C	SWI4	transcription factor
```

YGR183C	QCR9	7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

YML110C	COQ5	Putative mitochondrial C-methyltransferase

```
YNR016C	ACC1	acetyl-CoA carboxylase
```

YPL058C	PDR12	multidrug resistance transporter

```
YPL158C		
```

early_g1: -400 to -302 nt upstream of the ATG start codon: 11 genes

YBR052C		Homolog to YCR004, obr1 (S. pombe), trp repressor binding protein (E. coli)

YDR368W	YPR1	similar to aldo-keto reductase

```
YER111C	SWI4	transcription factor
```

YGL055W	OLE1	delta-9-fatty acid desaturase

YGR183C	QCR9	7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex

```
YHL026C		
```

YJL194W	CDC6	pre-initiation complex component

YLR273C	PIG1	Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit

YLR274W	CDC46	MCM initiator complex protein

```
YPL066W		
```

YPR019W	CDC54	Involved in initiation of DNA replication

early_g1: -301 to -203 nt upstream of the ATG start codon: 13 genes

```
YBR053C		
```
```
YBR157C		
```
```
YBR158W		
```
```
YCL040W	GLK1	Glucokinase
```
```
YDR511W		
```

YGL055W	OLE1	delta-9-fatty acid desaturase

YGR044C	RME1	zinc finger protein; negative regulator of meiosis; directly repressed by a1-a2 regulator

YGR183C	QCR9	7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex

```
YGR281W	YOR1	ABC transporter
```
```
YLR049C		
```
```
YNL078W		
```

YPL058C	PDR12	multidrug resistance transporter

```
YPR002W		
```

early_g1: -202 to -104 nt upstream of the ATG start codon: 8 genes

YBR083W	TEC1	transcription factor of the TEA/ATTS DNA-binding domain family, regulator of Ty1 expression

```
YBR200W	BEM1	contains two SH3 domains
```
```
YBR231C		
```
```
YDR033W		
```

YML110C	COQ5	Putative mitochondrial C-methyltransferase

YNR001C	CIT1	citrate synthase. Nuclear encoded mitochondrial protein.

```
YPL066W		
```
```
YPL158C		
```

early_g1: -103 to -5 nt upstream of the ATG start codon: 13 genes

```
YBR157C		
```
```
YDL179W	PCL9	Cyclin
```
```
YDR033W		
```

YEL032W	MCM3	component of DNA replication initiator complex

YGL055W	OLE1	delta-9-fatty acid desaturase

```
YGR035C		
```
```
YJL157C	FAR1	Cdc28p kinase inhibitor
```
```
YLR049C		
```
```
YLR254C		
```

YLR273C	PIG1	Protein similar to Gac1p, a putative type 1 protein phosphatase targeting subunit

```
YNR016C	ACC1	acetyl-CoA carboxylase
```
```
YNR067C		
```
```
YPL158C		
```

late_g1: -598 to -500 nt upstream of the ATG start codon: 13 genes

YGR238C	KEL2	involved in cell fusion and morphology; contains six Kelch repeats

```
YHR039C		Aldehyde dehydrogenases
```
```
YJL018W		
```

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

```
YKR077W		
```

YLR121C	YPS4	GPI-anchored aspartic protease

YML027W	YOX1	Homeobox-domain containing protein

```
YML061C	PIF1	5' to 3' DNA helicase
```

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

YPL153C	RAD53	protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation

YPR175W	DPB2	DNA polymerase epsilon, subunit B

```
YCL061C		
```

late_g1: -499 to -401 nt upstream of the ATG start codon: 25 genes

```
YAR003W		beta transducin domain
```

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

```
YBR089W		
```
```
YCL024W		Ser/Thr protein kinase
```

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL164C	CDC9	DNA ligase
```

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

```
YDR383C		
```
```
YGL028C	SCW11	soluble cell wall protein
```

YHR038W	FIL1	Putative mitochondrial ribosome recycling factor

```
YHR153C	SPO16	sporulation protein
```

YKL108W	SLD2	Synthetically lethal with dpb11-1; required for DNA replication

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YLR121C	YPS4	GPI-anchored aspartic protease

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

YLR383W	RHC18	involved in recombination repair

```
YLR457C	NBP1	Nap1p binding protein
```

YMR179W	SPT21	non-specific DNA binding protein

YNL102W	POL1	DNA polymerase I alpha subunit, p180

```
YNL300W		
```
```
YNL303W		
```
```
YNL310C		
```

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

```
YOL017W		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

late_g1: -400 to -302 nt upstream of the ATG start codon: 24 genes

```
YBR089W		
```
```
YCL024W		Ser/Thr protein kinase
```

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

```
YDL101C	DUN1	protein kinase
```
```
YDL119C		
```
```
YDR493W		
```

YFL008W	SMC1	omosome segregation protein

```
YGR109C	CLB6	B-type cyclin
```
```
YJL018W		
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YKL042W	SPC42	component of the spindle pole body

YKL108W	SLD2	Synthetically lethal with dpb11-1; required for DNA replication

YLR103C	CDC45	omosomal DNA replication initiation protein

```
YLR286C	CTS1	Endochitinase
```
```
YLR326W		
```

YNL173C	MDG1	Involved in G-protein mediated signal transduction

YNL272C	SEC2	GDP/GTP exchange factor for Sec4p

```
YOL017W		
```

YPL124W	NIP29	spindle pole body associated protein

```
YPL127C	HHO1	histone H1
```
```
YPL187W	MF(ALPHA)1	mating factor alpha
```
```
YPL267W		
```
```
YPR120C	CLB5	B-type cyclin
```
```
YCL061C		
```

late_g1: -301 to -203 nt upstream of the ATG start codon: 24 genes

```
YBR089W		
```
```
YER070W	RNR1	ribonucleotide reductase
```
```
YGL028C	SCW11	soluble cell wall protein
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

```
YJL181W		
```
```
YJL196C	ELO1	Elongation enzyme 1
```

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

YKL042W	SPC42	component of the spindle pole body

YKL108W	SLD2	Synthetically lethal with dpb11-1; required for DNA replication

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

YLR032W	RAD5	putative ATPase/DNA helicase

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

```
YLR376C		
```
```
YLR457C	NBP1	Nap1p binding protein
```

YML060W	OGG1	43-kDa 8-oxo-guanine DNA glycosylase

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

```
YOL017W		
```

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

YPL241C	CIN2	involved in microtubule function

```
YPR174C		
```
```
YCL061C		
```

late_g1: -202 to -104 nt upstream of the ATG start codon: 17 genes

```
YAR003W		beta transducin domain
```

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL105W	QRI2	
```
```
YDR383C		
```
```
YDR493W		
```
```
YGL028C	SCW11	soluble cell wall protein
```

YHR110W	ERP5	p24 protein involved in membrane trafficking

YKL042W	SPC42	component of the spindle pole body

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

```
YML061C	PIF1	5' to 3' DNA helicase
```

YMR078C	CTF18	(putative) involved in chromosome transmission during mitosis

```
YPL014W		
```

YPL124W	NIP29	spindle pole body associated protein

```
YPL208W		
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

```
YCL061C		
```

late_g1: -103 to -5 nt upstream of the ATG start codon: 45 genes

YAR007C	RFA1	69 kDa subunit of the heterotrimeric RPA (RF-A) single-stranded DNA binding protein, binds URS1 and CAR1

YBL035C	POL12	B subunit of DNA polymerase alpha-primase complex

```
YBR071W		
```

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YDL127W	PCL2	G1 cyclin
```

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YDR493W		
```

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

```
YGR109C	CLB6	B-type cyclin
```

YGR238C	KEL2	involved in cell fusion and morphology; contains six Kelch repeats

YHR110W	ERP5	p24 protein involved in membrane trafficking

YIL026C	IRR1	involved in cell morphology

YIL159W	BNR1	involved in actin filament organization

```
YJL018W		
```

YKL101W	HSL1	Putative protein kinase homologous to S. pombe cdr1/nim1

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

```
YKR077W		
```
```
YKR083C		
```

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLR032W	RAD5	putative ATPase/DNA helicase

```
YLR183C		
```

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

YML060W	OGG1	43-kDa 8-oxo-guanine DNA glycosylase

YMR179W	SPT21	non-specific DNA binding protein

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

YNL233W	BNI4	Is required to link Chs3p and Chs4p to the septins

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

```
YNL303W		
```

YOL007C	CSI2	Appears to be a structural component of the chitin synthase 3 complex

YOR316C	COT1	involved in cobalt accumulation

YOR317W	FAA1	long chain fatty acyl:CoA synthetase

YPL057C	SUR1	Multicopy suppressor of cls2-2; also suppresses rvs161 mutations

YPL153C	RAD53	protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation

```
YPL187W	MF(ALPHA)1	mating factor alpha
```
```
YPL208W		
```
```
YPL209C	IPL1	Protein kinase
```

YPL241C	CIN2	involved in microtubule function

```
YPL256C	CLN2	G(sub)1 cyclin
```
```
YPR120C	CLB5	B-type cyclin
```
```
YPR174C		
```

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

s: -598 to -500 nt upstream of the ATG start codon: 14 genes

```
YBR156C		
```

YBR275C	RIF1	RAP1-interacting factor, involved in establishment of repressed chromatin

```
YBR296C	PHO89	Probable Na+/Pi symporter
```
```
YDL094C		
```
```
YER018C	SPC25	component of spindle pole
```
```
YER118C	SSU81	Transmembrane osmosensor
```

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YHR172W	SPC97	spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP

YIR017C	MET28	transcriptional activator in the Cbf1p-Met4p-Met28p complex

YJR137C	ECM17	Putative sulfite reductase

YKR010C	TOF2	topoisomerase I interacting factor 2

```
YLR126C		
```

YLR228C	ECM22	involved in cell wall biogenesis (putative)

YMR190C	SGS1	has DNA helicase signature motifs

s: -499 to -401 nt upstream of the ATG start codon: 6 genes

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YJR137C	ECM17	Putative sulfite reductase

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

YKR010C	TOF2	topoisomerase I interacting factor 2

YLR045C	STU2	spindle pole body component

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

s: -400 to -302 nt upstream of the ATG start codon: 17 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

```
YBL063W	KIP1	kinesin related protein
```

YBR275C	RIF1	RAP1-interacting factor, involved in establishment of repressed chromatin

YBR276C	PPS1	dual specificity protein phosphatase

```
YBR296C	PHO89	Probable Na+/Pi symporter
```

YCR065W	HCM1	Transcription factor (fork head domain)

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YDL094C		
```

YDR252W	BTT1	negative regulator of RNA polymerase II

YER001W	MNN1	Alpha-1,3-mannosyltransferase

```
YFR026C		
```

YIL140W	SRO4	localizes to the plasma membrane

```
YJL118W		
```
```
YKL066W		
```

YLR045C	STU2	spindle pole body component

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

YOR026W	BUB3	cell cycle checkpoint protein

s: -301 to -203 nt upstream of the ATG start codon: 8 genes

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YIL126W	STH1	helicase related protein, snf2 homolog

```
YJL115W	ASF1	involved in silencing
```
```
YLR455W		
```

YPR141C	KAR3	kinesin-like nuclear fusion protein

s: -202 to -104 nt upstream of the ATG start codon: 11 genes

YBL052C	SAS3	involved in silencing at HMR

```
YDR113C	PDS1	42-kDa nuclear protein
```
```
YDR219C		
```

YDR356W	NUF1	component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein

YDR488C	PAC11	similar to rat dynein intermediate chain

```
YEL017W		
```

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YHR172W	SPC97	spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

YLR228C	ECM22	involved in cell wall biogenesis (putative)

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

s: -103 to -5 nt upstream of the ATG start codon: 25 genes

```
YBR007C		
```
```
YBR156C		
```
```
YBR184W		
```
```
YBR296C	PHO89	Probable Na+/Pi symporter
```

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

YCR065W	HCM1	Transcription factor (fork head domain)

```
YDL094C		
```

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

YDL197C	ASF2	Anti-silencing protein, involved in transcription

```
YDR179C		
```
```
YDR219C		
```

YDR356W	NUF1	component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein

YDR488C	PAC11	similar to rat dynein intermediate chain

```
YEL017W		
```

YEL061C	CIN8	kinesin-related protein involved in establishment and maintenance of mitotic spindle

YER016W	BIM1	microtubule-binding protein

```
YER018C	SPC25	component of spindle pole
```

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

```
YFR038W		
```

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YIL126W	STH1	helicase related protein, snf2 homolog

YIR017C	MET28	transcriptional activator in the Cbf1p-Met4p-Met28p complex

YJR137C	ECM17	Putative sulfite reductase

YLR045C	STU2	spindle pole body component

YOR026W	BUB3	cell cycle checkpoint protein

g2: -598 to -500 nt upstream of the ATG start codon: 11 genes

YDL198C	YHM1	(putative) mitochondrial carrier protein

YDR389W	SAC7	GTPase activating protein (GAP) for RHO1

YGL255W	ZRT1	high-affinity zinc transport protein

YIL106W	MOB1	(putative) transcriptional regulator involved in mitosis

```
YIL158W		
```

YJR076C	CDC11	Component of 10 nm filaments of mother-bud neck

```
YJR110W		
```
```
YKL048C	ELM1	protein kinase
```
```
YKL052C		
```
```
YNR009W		
```
```
YMR299C		
```

g2: -499 to -401 nt upstream of the ATG start codon: 16 genes

```
YBR043C		
```

YCR084C	TUP1	glucose repression regulatory protein, exhibits similarity to beta subunits of G proteins

```
YCR085W		
```
```
YCR086W		
```

YDL198C	YHM1	(putative) mitochondrial carrier protein

```
YDR325W		
```
```
YGL101W		
```

YJR076C	CDC11	Component of 10 nm filaments of mother-bud neck

YJR112W	NNF1	involved in nuclear function

YKL049C	CSE4	high similarity to histone H3 and to human centromere protein CENP-A

YKL068W	NUP100	Nuclear pore complex protein homologous to Nup116p

```
YLL046C	RNP1	ribonucleoprotein 1
```

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

YOR274W	MOD5	transfer RNA isopentenyl transferase

```
YPL264C		
```
```
YMR299C		
```

g2: -400 to -302 nt upstream of the ATG start codon: 11 genes

```
YBL032W		
```

YCL014W	BUD3	involved in bud site selection

YDR389W	SAC7	GTPase activating protein (GAP) for RHO1

YDR464W	SPP41	negative regulator of prp genes

YIL106W	MOB1	(putative) transcriptional regulator involved in mitosis

```
YIL131C	FKH1	
```
```
YIL158W		
```

YJL099W	CHS6	involved in chitin biosynthesis

```
YLL047W		
```

YLR014C	PPR1	zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type

YPR111W	DBF20	kinase required for late nuclear division

g2: -301 to -203 nt upstream of the ATG start codon: 18 genes

YBR104W	YMC2	mitochondrial carrier protein

```
YCL012W		
```
```
YCL012W		
```

YCL014W	BUD3	involved in bud site selection

YCR084C	TUP1	glucose repression regulatory protein, exhibits similarity to beta subunits of G proteins

```
YDR324C		
```
```
YDR325W		
```

YDR389W	SAC7	GTPase activating protein (GAP) for RHO1

```
YGL101W		
```

YIL106W	MOB1	(putative) transcriptional regulator involved in mitosis

YIL169C		serine-, threonine-rich protein

```
YJL092W	HPR5	DNA helicase
```

YJL137C	GLG2	glycogen synthesis initiator

YKL068W	NUP100	Nuclear pore complex protein homologous to Nup116p

```
YKL069W		
```
```
YNR009W		
```
```
YOR073W		
```

YPR111W	DBF20	kinase required for late nuclear division

g2: -202 to -104 nt upstream of the ATG start codon: 23 genes

```
YBL032W		
```
```
YBR043C		
```

YCL014W	BUD3	involved in bud site selection

YDL198C	YHM1	(putative) mitochondrial carrier protein

YDR389W	SAC7	GTPase activating protein (GAP) for RHO1

YDR464W	SPP41	negative regulator of prp genes

```
YIL050W	PCL7	PHO85 cyclin
```
```
YIL131C	FKH1	
```
```
YIL158W		
```

YIL169C		serine-, threonine-rich protein

YJL137C	GLG2	glycogen synthesis initiator

YJR076C	CDC11	Component of 10 nm filaments of mother-bud neck

```
YKL048C	ELM1	protein kinase
```

YKL049C	CSE4	high similarity to histone H3 and to human centromere protein CENP-A

YKL068W	NUP100	Nuclear pore complex protein homologous to Nup116p

```
YLL046C	RNP1	ribonucleoprotein 1
```
```
YMR215W		
```
```
YNR009W		
```

YOL012C	HTA3	An evolutionarily conserved member of the histone H2A F/Z family of histone variants

```
YOR073W		
```

YOR188W	MSB1	involved in polarized growth

YPL116W	HOS3	sequence similar to the histone deacetylase Hda1p

YPR111W	DBF20	kinase required for late nuclear division

g2: -103 to -5 nt upstream of the ATG start codon: 24 genes

```
YBL032W		
```
```
YCL012W		
```
```
YCL012W		
```

YDL198C	YHM1	(putative) mitochondrial carrier protein

```
YDR325W		
```
```
YDR366C		
```
```
YDR451C		
```
```
YGL101W		
```

YGL255W	ZRT1	high-affinity zinc transport protein

```
YIL050W	PCL7	PHO85 cyclin
```

YIL106W	MOB1	(putative) transcriptional regulator involved in mitosis

YJL099W	CHS6	involved in chitin biosynthesis

YJR112W	NNF1	involved in nuclear function

```
YKL048C	ELM1	protein kinase
```
```
YKL052C		
```
```
YKL053W		
```
```
YKL069W		
```
```
YLL047W		
```
```
YLR015W		
```
```
YNR009W		
```
```
YOR273C		
```
```
YPL264C		
```

YPR111W	DBF20	kinase required for late nuclear division

```
YMR299C		
```

m: -598 to -500 nt upstream of the ATG start codon: 17 genes

```
YAR018C	KIN3	protein kinase
```
```
YCL038C		Membrane transporter
```

YGR092W	DBF2	Serine/threonine protein kinase

YGR108W	CLB1	G(sub)2-specific B-type cyclin

YHR152W	SPO12	20 kDa protein with negatively charged C-terminus required for function; thought to be a positive regulator of exit from M-phase in mitosis and meiosis. Spo12p interacts with Dbf2p and Dbf20p protein kinases.

```
YIL161W		
```
```
YKL129C	MYO3	myosin I
```
```
YKL130C	SHE2	involved in cell polarity
```
```
YKR021W		
```

YLR131C	ACE2	zinc finger transcription factor

```
YML033W		
```

YMR001C	CDC5	protein kinase which functions at the G(sub)2/M boundary

YNL053W	MSG5	Dual-specificity protein tyrosine phosphatase

```
YOL069W	NUF2	53-kDa coiled-coil protein
```
```
YOL070C		
```

YOR058C	ASE1	encodes component of the spindle midzone

```
YOR315W		
```

m: -499 to -401 nt upstream of the ATG start codon: 16 genes

YAL022C	FUN26	predicted membrane protein

```
YDL138W	RGT2	glucose permease
```

YGL021W	ALK1	DNA damage-responsive protein

```
YGL116W	CDC20	beta-transducin homolog
```

YGR279C	SCW4	soluble cell wall protein; can be released from SDS-extracted cell walls under reducing conditions

```
YHR023W	MYO1	Class II Myosin
```

YHR152W	SPO12	20 kDa protein with negatively charged C-terminus required for function; thought to be a positive regulator of exit from M-phase in mitosis and meiosis. Spo12p interacts with Dbf2p and Dbf20p protein kinases.

```
YIL167W		
```
```
YKR021W		
```
```
YML033W		
```

YMR001C	CDC5	protein kinase which functions at the G(sub)2/M boundary

```
YNL058C		
```

YOR025W	HST3	involved in telomeric silencing

YOR058C	ASE1	encodes component of the spindle midzone

```
YOR229W	WTM2	Transcriptional modulator
```

YPL242C	IQG1	Similar to mammalian IQGAP proteins

m: -400 to -302 nt upstream of the ATG start codon: 8 genes

YGR230W	BNS1	similar to Spo12, involved in sporulation

YIL162W	SUC2	invertase (sucrose hydrolyzing enzyme)

```
YIL167W		
```

YJR092W	BUD4	involved in bud site selection

```
YKL130C	SHE2	involved in cell polarity
```
```
YLR190W		
```
```
YPR157W		
```

YPR167C	MET16	3'phosphoadenylylsulfate reductase

m: -301 to -203 nt upstream of the ATG start codon: 8 genes

YCR042C	TSM1	TATA binding protein-associated factor (TAF)

```
YGL116W	CDC20	beta-transducin homolog
```

YGL201C	MCM6	component of MCM initiator complex involved in DNA replication

YGR143W	SKN1	encodes a predicted type II membrane protein highly homologous to Kre6p

YLR353W	BUD8	involved in bud site selection

```
YML033W		
```

YOR058C	ASE1	encodes component of the spindle midzone

```
YPL186C		
```

m: -202 to -104 nt upstream of the ATG start codon: 14 genes

```
YDR146C	SWI5	transcriptional activator
```

YGL021W	ALK1	DNA damage-responsive protein

YGR230W	BNS1	similar to Spo12, involved in sporulation

YGR279C	SCW4	soluble cell wall protein; can be released from SDS-extracted cell walls under reducing conditions

YLR131C	ACE2	zinc finger transcription factor

```
YML119W		
```

YMR001C	CDC5	protein kinase which functions at the G(sub)2/M boundary

YNL053W	MSG5	Dual-specificity protein tyrosine phosphatase

```
YOL014W		
```
```
YOL137W		
```

YOR025W	HST3	involved in telomeric silencing

YOR058C	ASE1	encodes component of the spindle midzone

YPL242C	IQG1	Similar to mammalian IQGAP proteins

YPR167C	MET16	3'phosphoadenylylsulfate reductase

m: -103 to -5 nt upstream of the ATG start codon: 18 genes

YCL037C	SRO9	involved in actin filament organization

```
YCL038C		Membrane transporter
```

YGL021W	ALK1	DNA damage-responsive protein

```
YGL116W	CDC20	beta-transducin homolog
```

YGL201C	MCM6	component of MCM initiator complex involved in DNA replication

YGR108W	CLB1	G(sub)2-specific B-type cyclin

YHL028W	WSC4	Putative integral membrane protein containing novel cysteine motif. Similarity to SLG1 (WSC1), WSC2 and WSC3

```
YHR023W	MYO1	Class II Myosin
```

YHR152W	SPO12	20 kDa protein with negatively charged C-terminus required for function; thought to be a positive regulator of exit from M-phase in mitosis and meiosis. Spo12p interacts with Dbf2p and Dbf20p protein kinases.

```
YIL167W		
```

YJR092W	BUD4	involved in bud site selection

```
YKR021W		
```
```
YML034W		
```

YMR032W	HOF1	SH3 domain containing-protein

```
YNL057W		
```
```
YOL014W		
```
```
YOL069W	NUF2	53-kDa coiled-coil protein
```
```
YPR157W		
```

From Table IIb: Position-dependent, orientation-dependent pentamers ACAAA is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIb: Position-dependent, orientation-dependent pentamers
ACAAA
is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: