Position dependent AACGC

From Table IIb: Position-dependent, orientation-dependent pentamers
AACGC
is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

early_g1: -598 to -500 nt upstream of the ATG start codon: 5 genes

```
YGR035C		
```

YML110C	COQ5	Putative mitochondrial C-methyltransferase

YNR001C	CIT1	citrate synthase. Nuclear encoded mitochondrial protein.

```
YNR067C		
```
```
YPR002W		
```

early_g1: -499 to -401 nt upstream of the ATG start codon: 3 genes

```
YGR281W	YOR1	ABC transporter
```

YLL040C	VPS13	component of peripheral vacuolar membrane protein complex

```
YOR066W		
```

early_g1: -400 to -302 nt upstream of the ATG start codon: 7 genes

```
YBR053C		
```
```
YER111C	SWI4	transcription factor
```

YHR005C	GPA1	alpha subunit of G protein coupled to mating factor receptors

```
YHR022C		RAS-related protein
```
```
YLR049C		
```

YLR274W	CDC46	MCM initiator complex protein

```
YNL046W		
```

early_g1: -301 to -203 nt upstream of the ATG start codon: 4 genes

```
YDR511W		
```

YLR258W	GSY2	Glycogen synthase (UDP-glucose--starch glucosyltransferase)

```
YPL066W		
```

YPR019W	CDC54	Involved in initiation of DNA replication

early_g1: -202 to -104 nt upstream of the ATG start codon: 7 genes

YGR183C	QCR9	7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex

```
YGR281W	YOR1	ABC transporter
```
```
YHR022C		RAS-related protein
```

YJL194W	CDC6	pre-initiation complex component

YKL116C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

YLL040C	VPS13	component of peripheral vacuolar membrane protein complex

```
YMR007W		
```

early_g1: -103 to -5 nt upstream of the ATG start codon: 3 genes

YGR044C	RME1	zinc finger protein; negative regulator of meiosis; directly repressed by a1-a2 regulator

```
YHR022C		RAS-related protein
```
```
YML109W	ZDS2	Zds1 homolog
```

late_g1: -598 to -500 nt upstream of the ATG start codon: 12 genes

YGL200C	EMP24	type I transmemebrane protein, component of COPII-coated, ER-derived transport vesicles

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YJR148W	BAT2	Branched-Chain Amino Acid Transaminase

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

YLL022C	HIF1	interacts with histone acetyltransferase

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

YNL173C	MDG1	Involved in G-protein mediated signal transduction

YNL289W	PCL1	G(sub)1 cyclin that associates with PHO85

```
YNL303W		
```
```
YPL256C	CLN2	G(sub)1 cyclin
```

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

YMR076C	PDS5	(putative) involved in sister chromosome cohesion during mitosis

late_g1: -499 to -401 nt upstream of the ATG start codon: 12 genes

```
YDL156W		
```

YDR297W	SUR2	Syringomycin response protein 2

```
YER070W	RNR1	ribonucleotide reductase
```
```
YGL089C	MF(ALPHA)2	alpha mating factor
```

YKL161C		probable serine/threonine-specific protein kinase (EC 2.7.1.-)

YML027W	YOX1	Homeobox-domain containing protein

YNL225C	CNM67	Spindle pole body protein involved in nuclear migration

```
YNL262W	POL2	DNA polymerase II
```

YNL273W	TOF1	Interacts with topoisomerase I

```
YOR144C		
```
```
YPR120C	CLB5	B-type cyclin
```

YPR175W	DPB2	DNA polymerase epsilon, subunit B

late_g1: -400 to -302 nt upstream of the ATG start codon: 14 genes

```
YAR003W		beta transducin domain
```
```
YBR089W		
```

YDL003W	MCD1	involved in mitosis, similar to pombe Rad21

```
YDL119C		
```

YDR507C	GIN4	putative serine/threonine kinase

```
YER070W	RNR1	ribonucleotide reductase
```
```
YGR109C	CLB6	B-type cyclin
```

YJL074C	SMC3	involved in sister chromatid cohesion

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YJL173C	RFA3	subunit 3 of replication factor-A

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YKR013W	PRY2	Similar to plant PR-1 class of pathogen related proteins

YNL273W	TOF1	Interacts with topoisomerase I

```
YPL256C	CLN2	G(sub)1 cyclin
```

late_g1: -301 to -203 nt upstream of the ATG start codon: 11 genes

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

YDR309C	GIC2	Cdc42 binding protein, involved in bud emergence

```
YGL027C	CWH41	glucosidase I
```

YGR152C	RSR1	GTP-binding protein, ras superfamily

```
YLR183C		
```

YML027W	YOX1	Homeobox-domain containing protein

YMR179W	SPT21	non-specific DNA binding protein

YNL102W	POL1	DNA polymerase I alpha subunit, p180

YNL309W	STB1	Interacts with the putative transcription factor Sin3p

```
YOR144C		
```
```
YPL209C	IPL1	Protein kinase
```

late_g1: -202 to -104 nt upstream of the ATG start codon: 35 genes

YBR073W	RDH54	Putative helicase similar to RAD54

YBR088C	POL30	profilerating cell nuclear antigen (PCNA); accessory factor for DNA polymerase delta, mRNA increases in G1, peaks in S in mitosis, and increases prior to DNA synthesis in meiosis

```
YCL024W		Ser/Thr protein kinase
```
```
YDL010W		
```

YDL018C	ERP3	p24 protein involved in membrane trafficking

```
YDL105W	QRI2	
```
```
YDL119C		
```
```
YDL156W		
```
```
YDL164C	CDC9	DNA ligase
```

YDL227C	HO	Homothallic switching endonuclease

YDR097C	MSH6	Homolog of the human GTBP protein, forms a complex with Msh2p to repair both single-base and insertion-deletion mispairs, redundant with Msh3p in repair of insertion-deletion mispairs

YFL008W	SMC1	omosome segregation protein

```
YHR039C		Aldehyde dehydrogenases
```

YIL026C	IRR1	involved in cell morphology

YJR043C	POL32	third (55 kDa) subunit of DNA polymerase delta

YKL113C	RAD27	42 kDa 5' to 3' exonuclease required for Okazaki fragment processing

YKL165C	MCD4	(putative) involved in cell polarity

```
YKR077W		
```
```
YKR083C		
```

YLR103C	CDC45	omosomal DNA replication initiation protein

YLR212C	TUB4	gamma tubulin-like protein, interacts with Spc98p and Spc97p, the Tub4p-Spc98p-Spc97p complex may be part of the microtubule attachment site at the spindle pole body

```
YLR234W	TOP3	DNA Topoisomerase III
```

YLR313C	SPH1	homologous to Spa2p, localizes to sites of polarized growth

YLR383W	RHC18	involved in recombination repair

```
YLR457C	NBP1	Nap1p binding protein
```

YML060W	OGG1	43-kDa 8-oxo-guanine DNA glycosylase

YMR179W	SPT21	non-specific DNA binding protein

YNL102W	POL1	DNA polymerase I alpha subunit, p180

```
YNL262W	POL2	DNA polymerase II
```

YNL312W	RFA2	subunit 2 of replication factor RF-A; 29% identical to the human p34 subunit of RF-A

```
YOL017W		
```

YOL090W	MSH2	MutS homolog encoding major mismatch repair activity in mitosis and meiosis.

```
YOR144C		
```

YPL124W	NIP29	spindle pole body associated protein

```
YPR174C		
```

late_g1: -103 to -5 nt upstream of the ATG start codon: 15 genes

YBR073W	RDH54	Putative helicase similar to RAD54

YDL103C	QRI1	UDP-N-acetylglucosamine pyrophosphorylase

```
YDR013W		
```
```
YER070W	RNR1	ribonucleotide reductase
```
```
YHR153C	SPO16	sporulation protein
```

YJL078C	PRY3	Similar to plant PR-1 class of pathogen related proteins

YLL002W	KIM2	diepoxybutane and mitomycin C resistance

YLR103C	CDC45	omosomal DNA replication initiation protein

```
YML021C	UNG1	uracil DNA glycosylase
```

YNL082W	PMS1	MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch

```
YNL310C		
```
```
YPL208W		
```

YPL241C	CIN2	involved in microtubule function

```
YPR120C	CLB5	B-type cyclin
```
```
YCL061C		
```

s: -598 to -500 nt upstream of the ATG start codon: 2 genes

```
YER018C	SPC25	component of spindle pole
```
```
YNL176C		
```

s: -499 to -401 nt upstream of the ATG start codon: 9 genes

YAR008W	SEN34	34kDa subunit of the tetrameric tRNA splicing endonuclease

```
YBR007C		
```
```
YBR156C		
```

YBR275C	RIF1	RAP1-interacting factor, involved in establishment of repressed chromatin

YIL126W	STH1	helicase related protein, snf2 homolog

YIL140W	SRO4	localizes to the plasma membrane

YKL067W	YNK1	Nucleoside diphosphate kinase

```
YMR048W		
```

YPL016W	SWI1	Zinc-finger transcription factor

s: -400 to -302 nt upstream of the ATG start codon: 2 genes

YCR065W	HCM1	Transcription factor (fork head domain)

YIL140W	SRO4	localizes to the plasma membrane

s: -301 to -203 nt upstream of the ATG start codon: 7 genes

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

YCR065W	HCM1	Transcription factor (fork head domain)

YDL197C	ASF2	Anti-silencing protein, involved in transcription

```
YDR219C		
```
```
YER118C	SSU81	Transmembrane osmosensor
```
```
YNL176C		
```

YOR026W	BUB3	cell cycle checkpoint protein

s: -202 to -104 nt upstream of the ATG start codon: 11 genes

YBR275C	RIF1	RAP1-interacting factor, involved in establishment of repressed chromatin

YCR065W	HCM1	Transcription factor (fork head domain)

```
YDR113C	PDS1	42-kDa nuclear protein
```

YER016W	BIM1	microtubule-binding protein

YER017C	AFG3	ATP-dependent metalloprotease

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YHR172W	SPC97	spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP

YIR017C	MET28	transcriptional activator in the Cbf1p-Met4p-Met28p complex

```
YJL115W	ASF1	involved in silencing
```
```
YLL062C		
```
```
YLR126C		
```

s: -103 to -5 nt upstream of the ATG start codon: 5 genes

```
YEL018W		
```

YER001W	MNN1	Alpha-1,3-mannosyltransferase

YER017C	AFG3	ATP-dependent metalloprotease

```
YER118C	SSU81	Transmembrane osmosensor
```
```
YFR038W		
```

g2: -598 to -500 nt upstream of the ATG start codon: 3 genes

```
YIL131C	FKH1	
```

YJL099W	CHS6	involved in chitin biosynthesis

YOR274W	MOD5	transfer RNA isopentenyl transferase

g2: -499 to -401 nt upstream of the ATG start codon: 4 genes

```
YCL012W		
```
```
YCL012W		
```
```
YCR073C	SSK22	protein kinase
```
```
YCR085W		
```

g2: -400 to -302 nt upstream of the ATG start codon: 1 genes

```
YDR451C		
```

g2: -301 to -203 nt upstream of the ATG start codon: 3 genes

```
YIL158W		
```

YIL169C		serine-, threonine-rich protein

```
YKL069W		
```

g2: -202 to -104 nt upstream of the ATG start codon: 2 genes

```
YGL101W		
```
```
YKL069W		
```

g2: -103 to -5 nt upstream of the ATG start codon: 2 genes

YDR464W	SPP41	negative regulator of prp genes

```
YKL048C	ELM1	protein kinase
```

m: -598 to -500 nt upstream of the ATG start codon: 4 genes

YCL037C	SRO9	involved in actin filament organization

YGR279C	SCW4	soluble cell wall protein; can be released from SDS-extracted cell walls under reducing conditions

```
YIL161W		
```
```
YML034W		
```

m: -499 to -401 nt upstream of the ATG start codon: 6 genes

```
YAR018C	KIN3	protein kinase
```

YCL037C	SRO9	involved in actin filament organization

```
YKR021W		
```
```
YOL014W		
```
```
YOL069W	NUF2	53-kDa coiled-coil protein
```

YPL242C	IQG1	Similar to mammalian IQGAP proteins

m: -400 to -302 nt upstream of the ATG start codon: 3 genes

YGR279C	SCW4	soluble cell wall protein; can be released from SDS-extracted cell walls under reducing conditions

```
YMR031C		
```
```
YOR229W	WTM2	Transcriptional modulator
```

m: -301 to -203 nt upstream of the ATG start codon: 2 genes

```
YJL051W		
```

YJR092W	BUD4	involved in bud site selection

m: -202 to -104 nt upstream of the ATG start codon: 2 genes

```
YJL051W		
```
```
YOR315W		
```

m: -103 to -5 nt upstream of the ATG start codon: 4 genes

YAL022C	FUN26	predicted membrane protein

YHL028W	WSC4	Putative integral membrane protein containing novel cysteine motif. Similarity to SLG1 (WSC1), WSC2 and WSC3

```
YMR031C		
```
```
YOL070C		
```

From Table IIb: Position-dependent, orientation-dependent pentamers AACGC is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals:

From Table IIb: Position-dependent, orientation-dependent pentamers
AACGC
is found in the upstream regions of these cell cycle-regulated yeast genes in the following intervals: